Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0688
(592 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondria... 137 6e-33
At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,... 137 6e-33
At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondria... 137 6e-33
At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial... 41 5e-04
At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putati... 35 0.035
At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putati... 35 0.035
At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATP... 35 0.047
At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putati... 35 0.047
At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putati... 35 0.047
At3g54040.1 68416.m05975 photoassimilate-responsive protein-rela... 31 0.57
At2g33860.1 68415.m04157 auxin-responsive factor (ARF3) / ETTIN ... 30 1.3
At4g34340.1 68417.m04880 expressed protein 29 2.3
At5g60450.1 68418.m07582 auxin-responsive factor (ARF4) contains... 27 7.1
At3g62640.1 68416.m07036 expressed protein 27 7.1
At2g33640.1 68415.m04124 zinc finger (DHHC type) family protein ... 27 7.1
At5g39880.1 68418.m04837 expressed protein 27 9.4
>At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondrial
identical to SP|P83484 ATP synthase beta chain 2,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452187|dbj|AK118582.1|
Length = 556
Score = 137 bits (331), Expect = 6e-33
Identities = 66/101 (65%), Positives = 81/101 (80%), Gaps = 2/101 (1%)
Frame = +2
Query: 296 DVQFEDN--LPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSG 469
DV+FED LPPI+ +LEVQ+ RLVLEV+ HLG+N VRTIAMDGTEGLVRG+ VL++G
Sbjct: 95 DVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTG 154
Query: 470 SPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEA 592
+PI +PVG TLGRI+NV+GEPIDERG I T+ IH +A
Sbjct: 155 APITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDA 195
>At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,
putative strong similarity to SP|P83483 ATP synthase
beta chain 1, mitochondrial precursor (EC 3.6.3.14)
{Arabidopsis thaliana}, SP|P17614 ATP synthase beta
chain, mitochondrial precursor (EC 3.6.3.14) {Nicotiana
plumbaginifolia}; contains Pfam profiles PF00006: ATP
synthase alpha/beta family nucleotide-binding domain,
PF00306: ATP synthase ab C terminal, PF02874: ATP
synthase alpha/beta family beta-barrel domain
Length = 559
Score = 137 bits (331), Expect = 6e-33
Identities = 66/101 (65%), Positives = 81/101 (80%), Gaps = 2/101 (1%)
Frame = +2
Query: 296 DVQFEDN--LPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSG 469
DV+FED LPPI+ +LEVQ+ RLVLEV+ HLG+N VRTIAMDGTEGLVRG+ VL++G
Sbjct: 98 DVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTG 157
Query: 470 SPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEA 592
+PI +PVG TLGRI+NV+GEPIDERG I T+ IH +A
Sbjct: 158 APITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDA 198
>At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondrial
identical to SP|P83483 ATP synthase beta chain 1,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452102|dbj|AK118538.1|
Length = 556
Score = 137 bits (331), Expect = 6e-33
Identities = 66/101 (65%), Positives = 81/101 (80%), Gaps = 2/101 (1%)
Frame = +2
Query: 296 DVQFEDN--LPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSG 469
DV+FED LPPI+ +LEVQ+ RLVLEV+ HLG+N VRTIAMDGTEGLVRG+ VL++G
Sbjct: 95 DVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTG 154
Query: 470 SPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEA 592
+PI +PVG TLGRI+NV+GEPIDERG I T+ IH +A
Sbjct: 155 APITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDA 195
>At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial,
putative very strong similarity to SP|P23413 ATP
synthase alpha chain, mitochondrial (EC 3.6.3.14)
{Brassica campestris}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF00306: ATP synthase ab C terminal, PF02874:
ATP synthase alpha/beta family beta-barrel domain
Length = 777
Score = 41.1 bits (92), Expect = 5e-04
Identities = 19/72 (26%), Positives = 35/72 (48%)
Frame = +2
Query: 377 VAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPI 556
+A +L V + G + G V +GS + +P G LGR+++ +G PID +G +
Sbjct: 334 MALNLENENVGIVVFGGDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDAMGVPIDGKGAL 393
Query: 557 PTDKTAAIHAEA 592
+ + +A
Sbjct: 394 SDHEQRRVEVKA 405
>At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 35.1 bits (77), Expect = 0.035
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +2
Query: 392 GENTVRTIAMDGTEGLVRGQPVLD-SGSPIRIPVGAETLGRIINVIGEPIDERGPI 556
GE V + +GT G+ + +G ++ PV + LGRI N G+PID PI
Sbjct: 64 GEKAVVQV-FEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPI 118
>At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 35.1 bits (77), Expect = 0.035
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +2
Query: 392 GENTVRTIAMDGTEGLVRGQPVLD-SGSPIRIPVGAETLGRIINVIGEPIDERGPI 556
GE V + +GT G+ + +G ++ PV + LGRI N G+PID PI
Sbjct: 64 GEKAVVQV-FEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPI 118
>At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATPase
B subunit / vacuolar proton pump B subunit / V-ATPase 57
kDa subunit identical to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}
Length = 486
Score = 34.7 bits (76), Expect = 0.047
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +2
Query: 392 GENTVRTIAMDGTEGLV-RGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPI 556
GE V + +GT G+ + V +G ++ PV + LGRI N G+PID PI
Sbjct: 63 GEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPI 117
>At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 485
Score = 34.7 bits (76), Expect = 0.047
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +2
Query: 392 GENTVRTIAMDGTEGLV-RGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPI 556
GE V + +GT G+ + V +G ++ PV + LGRI N G+PID PI
Sbjct: 63 GEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPI 117
>At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 330
Score = 34.7 bits (76), Expect = 0.047
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +2
Query: 392 GENTVRTIAMDGTEGLV-RGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPI 556
GE V + +GT G+ + V +G ++ PV + LGRI N G+PID PI
Sbjct: 63 GEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPI 117
>At3g54040.1 68416.m05975 photoassimilate-responsive protein-related
contains weak similarity to mRNA inducible by sucrose
and salicylic acid expressed in sugar-accumulating
tobacco plants (GI:871487) [Nicotiana tabacum]
Length = 183
Score = 31.1 bits (67), Expect = 0.57
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +2
Query: 311 DNLPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLV 442
+NLP + + + R +LE A GE T RT A+D EG+V
Sbjct: 29 ENLPTNMCSFSISASGKRCILETANVAGEFTCRTSAVD-VEGIV 71
>At2g33860.1 68415.m04157 auxin-responsive factor (ARF3) / ETTIN
protein (ETT) identical to ETTIN GB:AF007788 from
[Arabidopsis thaliana]
Length = 608
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -3
Query: 401 CSHPNVGLPQVRGGEIDFAPQGHLESEAGY-LRIAHLPQH 285
C+ P + LP+ RG + + PQGHLE + I LP H
Sbjct: 59 CAGPLISLPK-RGSLVLYFPQGHLEQAPDFSAAIYGLPPH 97
>At4g34340.1 68417.m04880 expressed protein
Length = 353
Score = 29.1 bits (62), Expect = 2.3
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 556 DGTTLVNRFADYIDDATEGFSSHRDTNW 473
DG +++ FA ++ A +GFSS T W
Sbjct: 259 DGLSVIEAFAPAMEAARDGFSSEAHTEW 286
>At5g60450.1 68418.m07582 auxin-responsive factor (ARF4) contains
Pfam profile: PF02362 B3 DNA binding domain; identical
to cDNA auxin response factor 4 (ARF4) GI:4102597
Length = 788
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -3
Query: 401 CSHPNVGLPQVRGGEIDFAPQGHLESEA 318
C+ P LP+ +G + + PQGHLE +A
Sbjct: 70 CAGPLTCLPK-KGNVVVYFPQGHLEQDA 96
>At3g62640.1 68416.m07036 expressed protein
Length = 110
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/65 (24%), Positives = 27/65 (41%)
Frame = -2
Query: 501 VSAPTGIRIGEPESSTGCPRTKPSVPSMAMVRTVFSPKCWATSSTRRGDRFCTSRAFRIG 322
V T + P+S P P S + RT +P + T+R R T + + +
Sbjct: 27 VGGTTQVYSTRPDSPKFQPSIPPPPGSTSKTRTTATPWRLIDAETKRKKRIATYKTYALE 86
Query: 321 GRLSS 307
G++ S
Sbjct: 87 GKVKS 91
>At2g33640.1 68415.m04124 zinc finger (DHHC type) family protein
contains Pfam profile PF01529: DHHC zinc finger domain
Length = 565
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -3
Query: 509 DRGFQLP-PGYELVSQSLVRVAHGLSLQYRPWQWSELCSHPNVGLPQ 372
D+ Q P P V+ + R + GLS+QYR + LC+ PN+ + Q
Sbjct: 295 DQTSQYPSPASSAVTATSARSSLGLSIQYR---GASLCTPPNIFVDQ 338
>At5g39880.1 68418.m04837 expressed protein
Length = 363
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +3
Query: 204 LQSMPLTRGTMLLNLQEKAKVRLLPLSVLW*MCNSKITCL 323
LQ++P T T +LN +E++ + ++ MC +T L
Sbjct: 44 LQTLPFTEITEILNRKERSAPKTPEFKAMFTMCKGYVTYL 83
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,118,568
Number of Sequences: 28952
Number of extensions: 273961
Number of successful extensions: 686
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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