Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0687
         (588 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||...    29   0.38 
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    26   4.7  
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|...    25   6.2  
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica...    25   8.2  
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    25   8.2  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   8.2  
SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces ...    25   8.2  
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ...    25   8.2  

>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 29.5 bits (63), Expect = 0.38
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = -3

Query: 403 SDQDMNGIASPS---RPAEIMPLSQRTQKPRYSP 311
           SD ++ G+  P    +PA  +PLS+R+  P Y+P
Sbjct: 30  SDPELIGLLKPDNVDKPANSIPLSKRSTSPSYAP 63


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +1

Query: 301 FLTEGNIVVFGFVGIAALSPLDARVKLFHSYLGLIPNLSQFTTSE 435
           F   G   V G V +A+   +  RVK   ++LG  P +   T SE
Sbjct: 573 FFIGGGKAVHGLVNLASSRNVSDRVKCMVNFLGTEPLVGLKTASE 617


>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
           L7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 287

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -3

Query: 409 SGSDQDMNGIASPSRPAEIMPLSQRTQKPRYSPPLRIPGAFNFNL 275
           S +  D  G  S   P+E+MPL  + +      P  +PG FN N+
Sbjct: 214 SPTSGDQTGNISFGLPSEVMPLFPQIEAVYEMYPHSLPG-FNVNI 257


>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 666

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 541 EPEATGPNLYSNLSGVSNSAPSSI 470
           EPE   PN +   +G+SNS P  I
Sbjct: 315 EPEGLDPNSWWYPNGLSNSMPEEI 338


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -3

Query: 409 SGSDQDMNGIASPSRPAEI-MPLSQRT 332
           SGS  D+  I SP+ PAE   P + RT
Sbjct: 82  SGSSSDLLNIESPASPAEASSPFTVRT 108


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 518  VWTCRLWFFGIRLPRTAQ 571
            +W C LW++G  + R+ Q
Sbjct: 2068 IWACCLWYWGSYIDRSMQ 2085


>SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 547

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
 Frame = +3

Query: 408 EPFPVYYVGVCTGWGATGSWKIEDGAEFDTP---DRLEYKFG 524
           E +P+ Y   C     TG+W       F TP   D + +K+G
Sbjct: 393 ESYPIRYRSKCAAVATTGNWLWGFLITFFTPFISDSIGFKYG 434


>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +1

Query: 424 TTSESAQAGVPQAPGKSKMERNSI--LRTG*SISLDLS 531
           T +   +AGVP+  G+    RN I  LR+  S+SL LS
Sbjct: 318 TENVENEAGVPRKRGRPPGARNKIKRLRSEPSVSLTLS 355


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,575,991
Number of Sequences: 5004
Number of extensions: 57156
Number of successful extensions: 170
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)