Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0687
(588 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0313 - 8866182-8866381,8866470-8866638 32 0.39
04_04_0578 + 26353830-26353929,26354030-26354277,26354539-26354931 31 0.68
06_01_0172 + 1362101-1363708 29 2.1
11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395 29 2.7
01_06_0837 - 32328191-32328369,32328682-32328731,32328844-323289... 28 4.8
07_01_0505 - 3759254-3759490,3759846-3759989,3760135-3760347,376... 28 6.3
06_01_0099 + 824557-825532,826090-826245,826422-828064 28 6.3
04_04_1230 + 31929261-31929386,31929497-31929643,31929974-319300... 28 6.3
10_08_0551 + 18702081-18702251,18702328-18702424,18702533-187026... 27 8.4
06_01_1082 - 8847795-8848033,8848511-8848724 27 8.4
05_04_0141 - 18364065-18364176,18364722-18364948,18365183-183653... 27 8.4
01_05_0623 - 23768426-23768794 27 8.4
>02_02_0313 - 8866182-8866381,8866470-8866638
Length = 122
Score = 31.9 bits (69), Expect = 0.39
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +3
Query: 423 YYVGVCTGW--GATGSWKIEDGAEFDTPDRLEYKFGPVASGSLEFDYRGPHNCHV 581
++VG GW G G W E+G F D L +K+ P+ L+ D+ G C V
Sbjct: 29 WHVGDDKGWTFGVAG-W--ENGKAFKVGDVLVFKYSPMMHNVLQVDHAGYDGCKV 80
>04_04_0578 + 26353830-26353929,26354030-26354277,26354539-26354931
Length = 246
Score = 31.1 bits (67), Expect = 0.68
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +3
Query: 303 LNGGEYRGFWVRWDSGIISAGREGEAIPFISWSDPEP 413
L G +R WV W +I AG G F+ PEP
Sbjct: 195 LVGWNWRHHWVYWLGPLIGAGMAGALYEFVMAEQPEP 231
>06_01_0172 + 1362101-1363708
Length = 535
Score = 29.5 bits (63), Expect = 2.1
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +1
Query: 304 LTEGNIVVFGFVGIAALSPLDARVKLFHSY--LGLIPNLSQFTTSESAQAGVPQAPGKSK 477
L NI++ G VGI LDA +K+ LG+ P++ +TT SA G G K
Sbjct: 193 LVSCNILLKGLVGIG---DLDAALKVLDEMPGLGITPDVVTYTTVLSAYCGKGDIEGAQK 249
Query: 478 M 480
+
Sbjct: 250 L 250
>11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395
Length = 794
Score = 29.1 bits (62), Expect = 2.7
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 11/68 (16%)
Frame = -3
Query: 400 DQDMNGIASPSRPAEIMPLS-QR----TQKPRYSPPLRIPGAFNFNLI------GLGSIF 254
D+ + SP+ PA P S QR Q PRY PPLR P + + I G ++
Sbjct: 324 DRAASPARSPASPARRGPQSPQRRVSPAQSPRYQPPLRKPSTGDRSRIARRGGHGSAALS 383
Query: 253 PDDALSVS 230
PDD S +
Sbjct: 384 PDDDASTT 391
>01_06_0837 -
32328191-32328369,32328682-32328731,32328844-32328923,
32329193-32329345,32329505-32329654,32329877-32330000,
32330086-32330198,32330287-32330420,32330566-32331232
Length = 549
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = +3
Query: 291 APGILNGGEYRGF---WVRWDSGIISAGREGEAIPFISWSDPEPFPVYY 428
+P +L GG Y G W+R I+ G + P + + D P ++Y
Sbjct: 211 SPVVLFGGSYGGMLAAWMRLKYPHIAVGALASSAPILQFEDVVPSTIFY 259
>07_01_0505 -
3759254-3759490,3759846-3759989,3760135-3760347,
3760439-3760990,3761339-3761806,3761959-3762023,
3762133-3762265,3763798-3764022
Length = 678
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +3
Query: 414 FPVYYVGVCTGWGATGSWKIEDGAEFDT 497
+P Y G GWG ++ DGAE T
Sbjct: 113 YPAYLYGAYGGWGEYSTYLSHDGAETPT 140
>06_01_0099 + 824557-825532,826090-826245,826422-828064
Length = 924
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -3
Query: 373 PSRPAEIMPLSQRTQKPRYSPPLRIPGAFNFNLIGLGSIFPDDA 242
PS P + +P + + KPR PP R G + + + S P DA
Sbjct: 424 PSPPQQQLPPAS-SSKPRRPPPHRSHGGYKNGTVSVDSGAPHDA 466
>04_04_1230 +
31929261-31929386,31929497-31929643,31929974-31930065,
31930159-31930255,31930533-31930576,31930708-31930796,
31931083-31931174,31931266-31931412,31931539-31931644,
31931736-31931812,31932281-31932352,31932738-31932865,
31932947-31933142,31933206-31933407,31933642-31933691
Length = 554
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -3
Query: 295 GAFNFNLIGLGSIFPDDALSVSPASNHHLIHRIRFLRAC 179
G++NF+L L + D A + PAS+ L+ +R R C
Sbjct: 11 GSYNFHLRSLSAASRDSAAAADPASDPILLESVR--RVC 47
>10_08_0551 +
18702081-18702251,18702328-18702424,18702533-18702651,
18702757-18702924,18703296-18703424,18703659-18703719,
18703813-18703916,18704173-18704279,18704319-18704493,
18704657-18704770,18704883-18704966,18705536-18705608,
18705689-18705775,18705863-18705917,18706007-18706078,
18706470-18706532,18706640-18706754,18706844-18706915
Length = 621
Score = 27.5 bits (58), Expect = 8.4
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +3
Query: 219 LEAGETLRASSG-KIEPSPIRLKLKAPGILNGGE-YRGFWVRWDSGIISAGREG 374
L + +L +S+G + + L+ PGI GE + FWV G+I+ R+G
Sbjct: 333 LRSNSSLESSAGIGVLNMAKQAMLRMPGINRSGEGHNQFWVLDKDGLITKSRKG 386
>06_01_1082 - 8847795-8848033,8848511-8848724
Length = 150
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +3
Query: 423 YYVGVCTGWGATGSWKIEDGAEFDTPDRLEYKF 521
YYVG GWG W + G F D L +K+
Sbjct: 44 YYVGDAAGWGRNLDWWLA-GKTFYAGDVLVFKY 75
>05_04_0141 -
18364065-18364176,18364722-18364948,18365183-18365390,
18365497-18365706,18366078-18366180,18366214-18366325,
18367061-18367204,18367835-18367936,18368081-18368186,
18368301-18368335
Length = 452
Score = 27.5 bits (58), Expect = 8.4
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 4/96 (4%)
Frame = -3
Query: 328 KPRYSPPLRIPGAFNFNLIGLGSIFPDDALSVSPASNHHLIHRIRFLRACRERDVGIIRC 149
K +PP + N S P V ASN ++ + L AC R+ +++C
Sbjct: 149 KEMIAPPNIVSKMLNVVTDAAASFVPWRTTVVKDASNEVYVNIVEELDACVNREGALVKC 208
Query: 148 SDF---ELN*ST*NGEELVLKVVIYCHIHDIS-HDC 53
+ ++N S EL L I+D+ H C
Sbjct: 209 EAYGKIQVNSSLPGVPELTLSFSNPTIINDVRFHPC 244
>01_05_0623 - 23768426-23768794
Length = 122
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 161 AHIALTTGPQESDPMYEVMIGGWGNAKSVIRKNRTKP 271
A + T + S P + + GWGN S + + RT P
Sbjct: 32 AELGDDTSTKRSSPAWGGELVGWGNMSSPVWERRTSP 68
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,394,667
Number of Sequences: 37544
Number of extensions: 410105
Number of successful extensions: 1212
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1212
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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