Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0687
         (588 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27124| Best HMM Match : NHL (HMM E-Value=6.4e-17)                   31   0.70 
SB_12804| Best HMM Match : TF_Otx (HMM E-Value=7)                      29   3.7  
SB_25304| Best HMM Match : HDV_ag (HMM E-Value=0.55)                   29   3.7  
SB_34889| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     28   4.9  
SB_28276| Best HMM Match : Cerato-platanin (HMM E-Value=6.7)           28   4.9  
SB_39796| Best HMM Match : VWA (HMM E-Value=0)                         27   8.6  
SB_36923| Best HMM Match : FlaC_arch (HMM E-Value=0.34)                27   8.6  
SB_20027| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_1743| Best HMM Match : DUF563 (HMM E-Value=3.7)                     27   8.6  

>SB_27124| Best HMM Match : NHL (HMM E-Value=6.4e-17)
          Length = 415

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -3

Query: 265 GSIFPDDALSVSPASNHHL-IHRIRFLRACRERDVGIIRCSDFEL 134
           GSIF D    VS   NH L + R + L  C+ER++G     D EL
Sbjct: 303 GSIFHDKTFIVSDLRNHVLRVFRQKGLTICKERNIGQRGGKDGEL 347


>SB_12804| Best HMM Match : TF_Otx (HMM E-Value=7)
          Length = 245

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/55 (25%), Positives = 24/55 (43%)
 Frame = +1

Query: 331 GFVGIAALSPLDARVKLFHSYLGLIPNLSQFTTSESAQAGVPQAPGKSKMERNSI 495
           G  G   L P+        S  G +P+L Q     S  + +P +PG+  + R ++
Sbjct: 93  GVPGAPTLVPIQRPAPSVPSPTGRVPHLDQIPHVPSGPSSLPSSPGEPLISRGTV 147


>SB_25304| Best HMM Match : HDV_ag (HMM E-Value=0.55)
          Length = 2153

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +1

Query: 412 LSQFTTSESAQAGVPQAPGK-SKMERNS 492
           L +FT + +++ G+P  PGK S++ +NS
Sbjct: 448 LQEFTQTHASKGGIPSTPGKTSEVSKNS 475


>SB_34889| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 615

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 19/83 (22%), Positives = 40/83 (48%)
 Frame = +2

Query: 44  SLTTIMANVVDVAIDDNLQYQFFPVSSGSVQFKVRAANDAHIALTTGPQESDPMYEVMIG 223
           S TT+ ++V++ A+D         +   ++  +  A N A   ++ G   S+ M+EV++ 
Sbjct: 197 STTTVGSSVIEKAMD------LADLDEATISSRHPATNAALTLVSLGSVTSNLMHEVVVD 250

Query: 224 GWGNAKSVIRKNRTKPDKVEIES 292
             GN+ S +     +   V ++S
Sbjct: 251 ESGNSSSFLSSTPVEGPSVTVDS 273


>SB_28276| Best HMM Match : Cerato-platanin (HMM E-Value=6.7)
          Length = 225

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +3

Query: 279 LKLKAPGILNGGEYRGFWVRWDSGIISAGREGEAIPFISWSDPEPFPV-YYV 431
           L +   GI +  +   FWV + S  +  G     I    W+DP+P  V YY+
Sbjct: 1   LNIATSGITSAEKRMVFWVDFRSANLVLGSGATVIA--QWTDPDPLEVGYYI 50


>SB_39796| Best HMM Match : VWA (HMM E-Value=0)
          Length = 2119

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
 Frame = +3

Query: 228 GETLRASSGKIEPSPIRLKLKAP----GILNGGEYRG 326
           G  L+ SSGKI    ++L ++AP     +LN  EYRG
Sbjct: 549 GCNLKLSSGKIITEKVQLIVQAPPSLKSVLNTPEYRG 585


>SB_36923| Best HMM Match : FlaC_arch (HMM E-Value=0.34)
          Length = 240

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +3

Query: 342 DSGIISAGREGEAIPFISWSDPEPFPVYYVGVCTG 446
           D G +  G E   I F+ WS  + F      VCTG
Sbjct: 200 DKGNVKMGNELSDISFVLWSVEQEFASNAGAVCTG 234


>SB_20027| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 145

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -2

Query: 449 PACA-DSDVVNWERFGIRPRYEWNSFTLASSGDNAAIPTNPKTT 321
           P C  ++  V  +    RP+ EW S ++ +  D +A+P   KTT
Sbjct: 84  PTCTGNTPEVKCKTIVARPKREWASGSVPNEKDESALPDAIKTT 127


>SB_1743| Best HMM Match : DUF563 (HMM E-Value=3.7)
          Length = 249

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 262 SIFPDDALSVSPASNHHLIHRIRFLRAC 179
           S+ P+ A+S++  S HH   R  FLR C
Sbjct: 154 SLHPEVAMSLATYSLHHFTQRRFFLRRC 181


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,406,048
Number of Sequences: 59808
Number of extensions: 446531
Number of successful extensions: 1179
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1178
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)