Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0687
         (588 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g52460.1 68416.m05769 hydroxyproline-rich glycoprotein family...    29   3.0  
At4g14840.1 68417.m02281 expressed protein                             28   4.0  
At2g30600.2 68415.m03729 BTB/POZ domain-containing protein conta...    28   4.0  
At2g30600.1 68415.m03728 BTB/POZ domain-containing protein conta...    28   4.0  
At4g38770.1 68417.m05490 proline-rich family protein (PRP4) simi...    28   5.3  
At3g10100.1 68416.m01210 filament protein-related similar to YEA...    27   9.3  
At1g30850.1 68414.m03773 hypothetical protein                          27   9.3  
At1g03750.1 68414.m00355 helicase, putative similar to SP|Q03468...    27   9.3  

>At3g52460.1 68416.m05769 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 300

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -3

Query: 418 GKGSGSDQDMNGIASPSRPAEIMPLSQRTQKPRYSPPLRIPG 293
           G G  S++D+N    P  P +  P   +TQ+  Y P +  PG
Sbjct: 16  GPGQNSERDIN--QPPPPPPQSQPPPPQTQQQTYPPVMGYPG 55


>At4g14840.1 68417.m02281 expressed protein
          Length = 555

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +1

Query: 316 NIVVFGFVGIAALS--PLDARVKLFHSYLGLIPNLSQFTTSESAQAGVPQAP 465
           +I V    G+ A+S  P+D   + F SYL  + NL Q   SE+ Q      P
Sbjct: 294 HIYVSSMNGVIAVSHPPVDINPEEFDSYLNSLENLLQQQPSEAGQESSSSLP 345


>At2g30600.2 68415.m03729 BTB/POZ domain-containing protein contains
           Pfam PF00651: BTB/POZ domain; contains Interpro
           IPR000210/ PS50097: BTBB/POZ domain; similar to MigA
           (GI:1841872) [Dictyostelium discoideum]
          Length = 809

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
 Frame = +3

Query: 315 EYRGFWVRWDSGIISAGREGEAIPF----ISWSDPEP-FPVYYVGVCTGW 449
           E++ +W+    G+IS G+     PF      W DP+P   V YVG+ + W
Sbjct: 101 EFQSYWISIYDGLISIGK--GRYPFQNLVFKWQDPKPNCNVQYVGL-SSW 147


>At2g30600.1 68415.m03728 BTB/POZ domain-containing protein contains
           Pfam PF00651: BTB/POZ domain; contains Interpro
           IPR000210/ PS50097: BTBB/POZ domain; similar to MigA
           (GI:1841872) [Dictyostelium discoideum]
          Length = 809

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
 Frame = +3

Query: 315 EYRGFWVRWDSGIISAGREGEAIPF----ISWSDPEP-FPVYYVGVCTGW 449
           E++ +W+    G+IS G+     PF      W DP+P   V YVG+ + W
Sbjct: 101 EFQSYWISIYDGLISIGK--GRYPFQNLVFKWQDPKPNCNVQYVGL-SSW 147


>At4g38770.1 68417.m05490 proline-rich family protein (PRP4) similar
           to proline-rich protein [Arabidopsis thaliana]
           gi|6782442|gb|AAF28388; contains proline-rich extensin
           domains, INTERPRO:IPR002965
          Length = 448

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 364 PAEIMPLSQRTQKPRYSPPLRIP 296
           P E+ P  ++   P+YSPP+ +P
Sbjct: 171 PLELPPFLKKPCPPKYSPPVEVP 193


>At3g10100.1 68416.m01210 filament protein-related similar to YEAST
           NUF1 protein (Spindle poly body spacer protein SPC110)
           (SP:P32380) {Saccharomyces cerevisiae}; similar to
           Myosin heavy chain, smooth muscle isoform (SMMHC)
           (SP:P35749) {Homo sapiens}
          Length = 1004

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +1

Query: 412 LSQFTTSESAQAGVPQAPGKSKMERNSILRTG*SISLDLSPLVLWNS-ITADRT 570
           LSQF      +      P  ++ E N+ L     +  DL P+V WN+ ITA +T
Sbjct: 70  LSQFDPLIDLEDAYNTQPQYTEAEVNARLLHEDYVEFDLDPVVSWNTEITAKKT 123


>At1g30850.1 68414.m03773 hypothetical protein
          Length = 300

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -2

Query: 377 FTLASSGDNAAIPTNPKTTIFPSVKNSR 294
           F+ +SS  + + PT+P+T I P ++ +R
Sbjct: 261 FSTSSSSASVSCPTSPRTCITPRLRKAR 288


>At1g03750.1 68414.m00355 helicase, putative similar to SP|Q03468
           Excision repair protein ERCC-6 (Cockayne syndrome
           protein CSB) {Homo sapiens}; contains Pfam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain, PF02810: SEC-C motif
          Length = 862

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +3

Query: 477 DGAEFDTPDRLEYKFGPVASGSLEFDYRGPH 569
           D  E D  D    +FG       EFDY GP+
Sbjct: 85  DEEEVDEDDERSIEFGRPGLSRAEFDYSGPY 115


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,769,171
Number of Sequences: 28952
Number of extensions: 317622
Number of successful extensions: 943
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)