Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0686
         (610 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80344-2|CAB02487.3|  608|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z48621-4|CAA88542.1|  160|Caenorhabditis elegans Hypothetical pr...    30   1.5  
U53341-6|AAC69106.1|  790|Caenorhabditis elegans Hypothetical pr...    28   6.0  
U53341-5|AAL06020.1|  842|Caenorhabditis elegans Hypothetical pr...    28   6.0  

>Z80344-2|CAB02487.3|  608|Caenorhabditis elegans Hypothetical
           protein F15D4.4 protein.
          Length = 608

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +2

Query: 446 QIIIPTSNSTSTVKANVTKATLTRRPCPTT 535
           Q  IPT+  TST     T  T+T  P PTT
Sbjct: 86  QTTIPTTTPTSTQTTTPTTTTITTTPVPTT 115


>Z48621-4|CAA88542.1|  160|Caenorhabditis elegans Hypothetical
           protein R07B1.5 protein.
          Length = 160

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/31 (48%), Positives = 16/31 (51%)
 Frame = +2

Query: 455 IPTSNSTSTVKANVTKATLTRRPCPTTQIGI 547
           I TS ST+TV    T  T     C T QIGI
Sbjct: 41  IATSTSTTTVTTTTTVVTAACATCTTAQIGI 71


>U53341-6|AAC69106.1|  790|Caenorhabditis elegans Hypothetical
           protein F49E10.2a protein.
          Length = 790

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = +2

Query: 461 TSNSTSTVKANVTKATLTRRPCPTT 535
           TS STST     T  T T  P PTT
Sbjct: 625 TSTSTSTTTTTTTSTTATTTPQPTT 649


>U53341-5|AAL06020.1|  842|Caenorhabditis elegans Hypothetical
           protein F49E10.2b protein.
          Length = 842

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = +2

Query: 461 TSNSTSTVKANVTKATLTRRPCPTT 535
           TS STST     T  T T  P PTT
Sbjct: 625 TSTSTSTTTTTTTSTTATTTPQPTT 649


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,881,152
Number of Sequences: 27780
Number of extensions: 213505
Number of successful extensions: 396
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)