Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0685
         (496 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    25   4.7  
SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|...    25   4.7  
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    25   6.3  
SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyce...    25   8.3  
SPCC1739.05 |set5||histone lysine methyltransferase Set5 |Schizo...    25   8.3  

>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1379

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 15/62 (24%), Positives = 29/62 (46%)
 Frame = +1

Query: 55  NKQLSSAKSNVKFCVFICDYHGDSVFSRRHNKSVTIFKRNEENRSLALRTTPGGEMSVMQ 234
           ++Q  SA  +      +CD H  S FS   ++  +  + +E   S+ L  +PG  +S+  
Sbjct: 541 SQQTESASKSSSNISEMCDSHPPSNFSISASQQASKDRFSEATSSIDLDLSPGRSLSLAS 600

Query: 235 KR 240
            +
Sbjct: 601 SK 602


>SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 145

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 285 HCPRHAGQVAEVAVLPFLHHRHLAAGCSAEC 193
           HCP H   +A ++V   LH   +A  CS  C
Sbjct: 65  HCPFHRRGIASLSVCVALH--WIAFSCSVMC 93


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 247 CYLCDLPRMPWAMLHEFSEAV 309
           CY    P MP  ML+EF + +
Sbjct: 829 CYFLIQPEMPLDMLYEFEDVI 849


>SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 459

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +2

Query: 170 ETKKTDLSHSALHPAARCR*CRNGNTATSATCPACRGQC 286
           +T+  + S++  H A       N      ATCP+C  QC
Sbjct: 228 KTQTNNASNTLKHDATAVEVDPNEVHTFHATCPSCSHQC 266


>SPCC1739.05 |set5||histone lysine methyltransferase Set5
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 319

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 7/37 (18%), Positives = 22/37 (59%)
 Frame = +1

Query: 88  KFCVFICDYHGDSVFSRRHNKSVTIFKRNEENRSLAL 198
           + CV   D+   S+F+++  K++++++  +  + L +
Sbjct: 233 RLCVIHGDFERASIFAKKGTKAISLYEGTDSEKYLKI 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,786,318
Number of Sequences: 5004
Number of extensions: 31580
Number of successful extensions: 89
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)