Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0685
(496 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0668 + 5441363-5441728,5442136-5442291,5442359-5442619 33 0.17
06_02_0035 + 10816723-10819497,10819964-10820011 30 1.2
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769... 29 2.7
01_01_0137 + 1249081-1249341,1249500-1250237 29 2.7
06_03_0505 + 21545547-21545813,21546075-21546167,21546535-215467... 28 4.7
01_01_0123 - 1142557-1142744,1143281-1143497 27 6.3
07_03_0123 - 13688562-13689146,13689233-13689583,13689665-136898... 27 8.3
04_04_0451 - 25323178-25323241,25323614-25323741,25324533-253246... 27 8.3
>11_01_0668 + 5441363-5441728,5442136-5442291,5442359-5442619
Length = 260
Score = 32.7 bits (71), Expect = 0.17
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Frame = +1
Query: 82 NVKFCVFICDYHGDSVFSRRHNKSVTIFKRN-EENRSLALRTTPGGEMSVMQKRQHCYLC 258
++ +CVF CDY +R S+ FK N R+ L T P + ++ C+
Sbjct: 20 SITYCVFYCDYR-----TRMDFPSLVTFKFNTNTGRTPLLETMPSLATAAVRLDHFCH-- 72
Query: 259 DLPRMPWAMLHEFSEAVCRGCVNYEGADRIEVV 357
D W + +A C+GC +Y D + V
Sbjct: 73 DRCANGW--YDDCGDAGCKGCHDYYRPDEYDCV 103
>06_02_0035 + 10816723-10819497,10819964-10820011
Length = 940
Score = 29.9 bits (64), Expect = 1.2
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +2
Query: 209 PAARCR*CRNGNTATSATCPACRGQC 286
P A+ C TAT+ CPACR C
Sbjct: 363 PQAQTHGCCGWMTATARPCPACRSDC 388
>12_01_0831 -
7688342-7688772,7690678-7692610,7693142-7693915,
7694019-7694142,7696084-7696189,7696346-7696532
Length = 1184
Score = 28.7 bits (61), Expect = 2.7
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = -3
Query: 428 PFACDGPRPSWKP*ARFSCLAVSRTTSIRSAPS*FTHPRHTASENSCNIAHG 273
PFA P PSW+P S ++ S S T PR + S S ++ G
Sbjct: 178 PFALQPPTPSWRPSTPPSAKTLTPPRRSPSPASTLTPPRRSPSPASRRMSTG 229
>01_01_0137 + 1249081-1249341,1249500-1250237
Length = 332
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +1
Query: 244 HCYLCDLPRMPWAMLHEFSEAVCRGCVNYEG 336
HC+ C LP P E + VC GC G
Sbjct: 73 HCHACLLPLKPPVFKCEAAHVVCSGCRGNHG 103
>06_03_0505 +
21545547-21545813,21546075-21546167,21546535-21546747,
21548933-21549124,21549217-21550197
Length = 581
Score = 27.9 bits (59), Expect = 4.7
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +1
Query: 148 KSVTIFKRNEENRSLALRTTPGGEMSVMQKRQHCYLCDLPRMP 276
+S+ I R + N SLA TPG + +HC LP +P
Sbjct: 191 QSLLINGRGQFNCSLAAAHTPGAKQCAAAGNRHCAPVILPVLP 233
>01_01_0123 - 1142557-1142744,1143281-1143497
Length = 134
Score = 27.5 bits (58), Expect = 6.3
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Frame = +1
Query: 109 DYHGDSVFSRRHNKSVTIFKRNEENRSLAL-RTTPGGEMSVMQKRQHCYLCDLPRMPWAM 285
D GD RH+ + ++ + + + S + R TP EM +++ C+ CD P+
Sbjct: 61 DADGDRDSDGRHDTTSSVGQSSAQVASRTVCRLTPP-EMDERRRKGLCFNCD---DPYTR 116
Query: 286 LHEFSEAVCRGCVNYEGAD 342
+ E S A+ R C N GAD
Sbjct: 117 VDEKS-ALGRWCRNCVGAD 134
>07_03_0123 -
13688562-13689146,13689233-13689583,13689665-13689861,
13689954-13690072,13690103-13690245,13690332-13690544,
13690649-13690774,13690891-13691028,13691109-13691454,
13691532-13691798,13691939-13691983,13692148-13692349,
13692405-13692507,13692599-13692810,13692891-13693113,
13693211-13693291
Length = 1116
Score = 27.1 bits (57), Expect = 8.3
Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 6/94 (6%)
Frame = +1
Query: 208 PGGEMSVMQKRQHCYLC------DLPRMPWAMLHEFSEAVCRGCVNYEGADRIEVVLETA 369
PG + Q Q C +C + P+ +E + VCR C YE + + +
Sbjct: 26 PGPKPLRQQNGQVCQICGDDVGLNPDGEPFVACNECAFPVCRDCYEYERREGTQNCPQCK 85
Query: 370 RQLKRAHGFQEGRGPSHAKGAHRTPLEAHQNGAE 471
+ KR G P G R P + ++G +
Sbjct: 86 TRFKRLRGKSH---PQCRIGCARVPGDEEEDGVD 116
>04_04_0451 -
25323178-25323241,25323614-25323741,25324533-25324634,
25325314-25325382,25325489-25325557,25325646-25325720,
25325805-25325909,25326394-25326492,25326626-25328344,
25328629-25328931,25329031-25329129,25329733-25329850,
25329933-25330018,25330091-25330159,25330232-25330306,
25330675-25330772,25331271-25331432,25332391-25332556,
25332902-25332970,25333064-25333126,25333221-25333376,
25334027-25334365
Length = 1410
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = -3
Query: 230 ITDISPPGVVRSARDRFSSFLLKIVTDLLCLREKTLSPW*SQIKTQNFT 84
+ D S P + ++ S LL+ +T L RE++ SP+ I +++ T
Sbjct: 605 LLDSSVPSTINASARNGGSRLLESMTTQLGTRERSRSPYLGNISSESMT 653
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,565,821
Number of Sequences: 37544
Number of extensions: 238643
Number of successful extensions: 725
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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