Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0685
(496 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81103-2|CAB03213.1| 403|Caenorhabditis elegans Hypothetical pr... 88 3e-18
Z81103-1|CAB03208.2| 457|Caenorhabditis elegans Hypothetical pr... 88 3e-18
Z69659-1|CAA93483.1| 329|Caenorhabditis elegans Hypothetical pr... 33 0.15
U12964-3|AAA91222.2| 1032|Caenorhabditis elegans Nhl (ring finge... 27 7.5
Z83220-1|CAB05700.2| 440|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical p... 27 9.9
Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical pr... 27 9.9
AF067616-11|AAC19194.2| 627|Caenorhabditis elegans Collagen pro... 27 9.9
>Z81103-2|CAB03213.1| 403|Caenorhabditis elegans Hypothetical
protein M04G12.1b protein.
Length = 403
Score = 88.2 bits (209), Expect = 3e-18
Identities = 41/79 (51%), Positives = 52/79 (65%)
Frame = +1
Query: 238 RQHCYLCDLPRMPWAMLHEFSEAVCRGCVNYEGADRIEVVLETARQLKRAHGFQEGRGPS 417
RQ CYLCDLPR PWA+++++ E VCRGCVNYEG+DRIE+VLE RQ K+ G P
Sbjct: 49 RQQCYLCDLPRWPWAIINDYIEPVCRGCVNYEGSDRIELVLEETRQQKKLQGVGIS-DPQ 107
Query: 418 HAKGAHRTPLEAHQNGAET 474
+AK + R Q +T
Sbjct: 108 NAKTSLRDITLTQQQPLQT 126
>Z81103-1|CAB03208.2| 457|Caenorhabditis elegans Hypothetical
protein M04G12.1a protein.
Length = 457
Score = 88.2 bits (209), Expect = 3e-18
Identities = 41/79 (51%), Positives = 52/79 (65%)
Frame = +1
Query: 238 RQHCYLCDLPRMPWAMLHEFSEAVCRGCVNYEGADRIEVVLETARQLKRAHGFQEGRGPS 417
RQ CYLCDLPR PWA+++++ E VCRGCVNYEG+DRIE+VLE RQ K+ G P
Sbjct: 76 RQQCYLCDLPRWPWAIINDYIEPVCRGCVNYEGSDRIELVLEETRQQKKLQGVGIS-DPQ 134
Query: 418 HAKGAHRTPLEAHQNGAET 474
+AK + R Q +T
Sbjct: 135 NAKTSLRDITLTQQQPLQT 153
>Z69659-1|CAA93483.1| 329|Caenorhabditis elegans Hypothetical
protein F07C6.1 protein.
Length = 329
Score = 32.7 bits (71), Expect = 0.15
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 244 HCYLCDLPRMPWAMLHEFSEAVCRGCVNYEGADRI 348
HC++CD + M+H F +A C C G D++
Sbjct: 262 HCFICDR-NVGGGMVHVFGKAFCPECYRCRGCDKV 295
>U12964-3|AAA91222.2| 1032|Caenorhabditis elegans Nhl (ring finger
b-box coiled coil)domain containing protein 2 protein.
Length = 1032
Score = 27.1 bits (57), Expect = 7.5
Identities = 18/58 (31%), Positives = 21/58 (36%)
Frame = +2
Query: 143 IINQ*QFSRETKKTDLSHSALHPAARCR*CRNGNTATSATCPACRGQCCMSFQKQCVE 316
++N Q T DL HP R C N C AC C KQC+E
Sbjct: 208 VMNLFQGHTVTTFADLRQPGAHPELRQVMCSTHNQHMRYLCAACETAAC----KQCLE 261
>Z83220-1|CAB05700.2| 440|Caenorhabditis elegans Hypothetical
protein C34B7.1 protein.
Length = 440
Score = 26.6 bits (56), Expect = 9.9
Identities = 11/37 (29%), Positives = 14/37 (37%)
Frame = +2
Query: 212 AARCR*CRNGNTATSATCPACRGQCCMSFQKQCVEGV 322
A RCR C + N P C C+ Q G+
Sbjct: 17 AIRCRSCYSYNGQACVNAPDCESDVCLYEQLNAANGI 53
>Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical protein
C26C6.1a protein.
Length = 1883
Score = 26.6 bits (56), Expect = 9.9
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -3
Query: 221 ISPPGVVRSARDRFSSFLLKIVTDLLCLREKTLSPW 114
++PP + S R S LK + L R+K++S W
Sbjct: 1784 VAPPNQIHSRRVLHSEAYLKYIESLAQNRQKSVSRW 1819
>Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical
protein C26C6.1a protein.
Length = 1883
Score = 26.6 bits (56), Expect = 9.9
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -3
Query: 221 ISPPGVVRSARDRFSSFLLKIVTDLLCLREKTLSPW 114
++PP + S R S LK + L R+K++S W
Sbjct: 1784 VAPPNQIHSRRVLHSEAYLKYIESLAQNRQKSVSRW 1819
>Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical
protein C26C6.1b protein.
Length = 513
Score = 26.6 bits (56), Expect = 9.9
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -3
Query: 221 ISPPGVVRSARDRFSSFLLKIVTDLLCLREKTLSPW 114
++PP + S R S LK + L R+K++S W
Sbjct: 414 VAPPNQIHSRRVLHSEAYLKYIESLAQNRQKSVSRW 449
>AF067616-11|AAC19194.2| 627|Caenorhabditis elegans Collagen
protein 99 protein.
Length = 627
Score = 26.6 bits (56), Expect = 9.9
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 409 GPSHAKGAHRTPLEAHQNGAETTRGQPAP 495
GP +G H T E + G E ++G P P
Sbjct: 513 GPMGLRGPHGTEGETGKQGPEGSKGYPGP 541
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,498,581
Number of Sequences: 27780
Number of extensions: 201431
Number of successful extensions: 626
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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