Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0685
         (496 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   4.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   5.4  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   5.4  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 391 GFQEGRGPSHAKGAHRTPLEAH 456
           GF+ G+G         TP+EAH
Sbjct: 170 GFEPGKGLGKQLQGISTPVEAH 191


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 6/23 (26%), Positives = 16/23 (69%)
 Frame = +2

Query: 413 RRMQKEHIVRP*KPIKMEQKQQE 481
           ++ Q +H++   +P + +Q+QQ+
Sbjct: 427 QQQQTQHVINAQQPQQQQQQQQQ 449


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +1

Query: 286 LHEFSEAVCRGCVNYEGADRIEVVLETARQLKR 384
           +HE   A C   V   G  R+E +L    Q+ R
Sbjct: 65  VHEKGGASCGPNVYNRGVQRLEAMLFAVDQINR 97


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,056
Number of Sequences: 438
Number of extensions: 2341
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13667319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)