Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0685
         (496 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61030.1 68414.m06871 expressed protein                             29   2.3  
At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-rel...    27   5.3  
At3g19300.1 68416.m02448 protein kinase family protein contains ...    27   5.3  
At3g62150.1 68416.m06983 multidrug resistant (MDR) ABC transport...    27   9.2  
At3g25560.2 68416.m03179 protein kinase family protein contains ...    27   9.2  
At3g25560.1 68416.m03178 protein kinase family protein contains ...    27   9.2  
At3g11960.2 68416.m01476 cleavage and polyadenylation specificit...    27   9.2  
At3g11960.1 68416.m01475 cleavage and polyadenylation specificit...    27   9.2  
At1g70460.1 68414.m08107 protein kinase, putative contains Pfam ...    27   9.2  
At1g70450.1 68414.m08105 protein kinase family protein contains ...    27   9.2  
At1g64840.1 68414.m07351 F-box family protein contains Pfam:PF00...    27   9.2  

>At1g61030.1 68414.m06871 expressed protein 
          Length = 840

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +1

Query: 148 KSVTIFKRNEENRSLALRTTP--GGEMSVMQKRQHCYL 255
           KS+++ KRN+    +   TTP  G + SVM    HC L
Sbjct: 440 KSLSVSKRNQSAFLVGCSTTPKPGSQSSVMSTIDHCTL 477


>At4g02660.1 68417.m00361 WD-40 repeat family protein /
           beige-related contains Pfam PF00400: WD domain, G-beta
           repeat; similar to BEIGE (GI:3928547) [Rattus
           norvegicus]; lysosomal trafficking regulator - Bos
           taurus, EMBL: AF114785
          Length = 3471

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 255 EVAVLPFLHHRHLAAGCSAECERSVFFV 172
           EV V PFL    +A+   AECE++ F V
Sbjct: 895 EVLVPPFLTSESMASAEMAECEKASFLV 922


>At3g19300.1 68416.m02448 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 663

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = -2

Query: 255 EVAVLPFLHHRHLAA---GCSAECERSVFFVSLEN 160
           E+ +L  LHHRHL A    C+ + ER + +  +EN
Sbjct: 370 EIELLARLHHRHLVALKGFCNKKNERFLVYEYMEN 404


>At3g62150.1 68416.m06983 multidrug resistant (MDR) ABC transporter,
            putative similar to multidrug-resistant protein CjMDR1
            GI:14715462 from [Coptis japonica]; contains Pfam
            profiles PF00005: ABC transporter, PF00664: ABC
            transporter transmembrane region
          Length = 1292

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 295  FSEAVCRGCVNYEGADRIEVVLETARQLKRAHGFQEG 405
            F+E +       +G D  E  + +A +L  AHGF  G
Sbjct: 1136 FNETIRANIAYGKGGDATETEIVSAAELSNAHGFISG 1172


>At3g25560.2 68416.m03179 protein kinase family protein contains
           Prosite:PS00108: Serine/Threonine protein kinases
           active-site signature and PS00107: Protein kinases
           ATP-binding region signature
          Length = 636

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 94  CVFICDYHGDSVFSRRHNKSVTIFKRNEENR 186
           C+ I  +     + RRHNK V  F  NE+N+
Sbjct: 260 CLLIIGFGFLLWWRRRHNKQVLFFDINEQNK 290


>At3g25560.1 68416.m03178 protein kinase family protein contains
           Prosite:PS00108: Serine/Threonine protein kinases
           active-site signature and PS00107: Protein kinases
           ATP-binding region signature
          Length = 635

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 94  CVFICDYHGDSVFSRRHNKSVTIFKRNEENR 186
           C+ I  +     + RRHNK V  F  NE+N+
Sbjct: 259 CLLIIGFGFLLWWRRRHNKQVLFFDINEQNK 289


>At3g11960.2 68416.m01476 cleavage and polyadenylation specificity
           factor (CPSF) A subunit C-terminal domain-containing
           protein similar to Splicing factor 3B subunit 3
           (Spliceosome associatedprotein 130) (SAP 130) (SF3b130)
           (Pre-mRNA splicing factor SF3b 130kDa subunit)
           (SP:Q15393) [Homo sapiens]; contains Pfam PF03178 : CPSF
           A subunit region
          Length = 1329

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -2

Query: 270 AGQVAEVAVLPFLHHRHLAAGCSAECERSVFFVSLENC 157
           A Q      + F    H    CS EC + + FVS ENC
Sbjct: 795 ARQSLSYTSISFQPSTHATPVCSFECPQGILFVS-ENC 831


>At3g11960.1 68416.m01475 cleavage and polyadenylation specificity
           factor (CPSF) A subunit C-terminal domain-containing
           protein similar to Splicing factor 3B subunit 3
           (Spliceosome associatedprotein 130) (SAP 130) (SF3b130)
           (Pre-mRNA splicing factor SF3b 130kDa subunit)
           (SP:Q15393) [Homo sapiens]; contains Pfam PF03178 : CPSF
           A subunit region
          Length = 1379

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -2

Query: 270 AGQVAEVAVLPFLHHRHLAAGCSAECERSVFFVSLENC 157
           A Q      + F    H    CS EC + + FVS ENC
Sbjct: 853 ARQSLSYTSISFQPSTHATPVCSFECPQGILFVS-ENC 889


>At1g70460.1 68414.m08107 protein kinase, putative contains Pfam
           PF00069: Protein kinase domain
          Length = 710

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = -2

Query: 258 AEVAVLPFLHHRHLAA---GCSAECERSVFFVSLEN 160
           AEV ++  +HHRHL +    C A+ ER + +  + N
Sbjct: 396 AEVEIISRVHHRHLVSLVGYCIADSERLLIYEYVPN 431


>At1g70450.1 68414.m08105 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 394

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = -2

Query: 258 AEVAVLPFLHHRHLAA---GCSAECERSVFFVSLEN 160
           AEV ++  +HHRHL +    C A+ ER + +  + N
Sbjct: 92  AEVEIISRVHHRHLVSLVGYCIADSERLLIYEYVPN 127


>At1g64840.1 68414.m07351 F-box family protein contains Pfam:PF00646
           F-box domain
          Length = 384

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +1

Query: 190 LALRTTPGGEMSVMQK-RQHCYLCDLPRMPWAMLHEFSEAVCRGCVNYEG 336
           L ++   G E  V+ + R H  +     M W  + + S A C+G V++ G
Sbjct: 159 LPVKKNGGDEFVVLLRYRNHLLVLRSSEMRWMKVKKTSIASCKGLVSFRG 208


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,727,839
Number of Sequences: 28952
Number of extensions: 177787
Number of successful extensions: 565
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 868578304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)