Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0684
         (591 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0349 - 3082700-3083407                                           30   1.6  
01_01_0161 - 1385408-1385566,1385815-1385943,1386164-1386322,138...    29   2.8  
05_02_0072 - 6334613-6335215                                           28   4.8  
05_01_0372 - 2913518-2916562,2916674-2917528                           28   4.8  
08_01_0350 - 3087631-3088461                                           28   6.4  

>08_01_0349 - 3082700-3083407
          Length = 235

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +2

Query: 248 AKLATSVFAIVLFFLGNFGITAGAHRLWSHNGYKVKLPL 364
           A+L+   FAI++ FL  F +   + R +SH G  V +PL
Sbjct: 104 AELSVKFFAILVCFLLAFLLNVQSIRYYSHTGLLVNVPL 142


>01_01_0161 -
           1385408-1385566,1385815-1385943,1386164-1386322,
           1387228-1387571,1387641-1387905,1387998-1388075,
           1388207-1388260,1389341-1389361,1389453-1389578,
           1389696-1389863,1389923-1390313,1390629-1390710,
           1391175-1391536,1391806-1392630,1392956-1393476
          Length = 1227

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
 Frame = +2

Query: 338 NGYKVKLPLEI-LLMVFNSIAFQNTIFTWVRDHRLHHKYTDTDADPHNATRGFFFSHIGW 514
           N Y V+  LE  LL +F  + F NT    V    +H+ +   DA+P N      F+ IG 
Sbjct: 736 NEYSVRRALEAYLLWLFGWVMFTNTHGHAVDKGLIHYAWAIVDAEPENLWATERFA-IGR 794

Query: 515 LLVRKHPMVKIAGKSLD 565
           L+V   P     G+S +
Sbjct: 795 LVV--DPTAYTIGRSAE 809


>05_02_0072 - 6334613-6335215
          Length = 200

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 488 GFFFSHIGWLLVRKHPMVKIAGKSLDMSDIYC 583
           GF  SH+   L+R HP  ++   +LD  D YC
Sbjct: 33  GFIASHVANRLLRDHPSYRVV--ALDKLDDYC 62


>05_01_0372 - 2913518-2916562,2916674-2917528
          Length = 1299

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +3

Query: 249 QNWLHRFLLLCYSS 290
           Q+W H+ LLLCYSS
Sbjct: 855 QSWRHQMLLLCYSS 868


>08_01_0350 - 3087631-3088461
          Length = 276

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 254 LATSVFAIVLFFLGNFGITAGAHRLWSHNGYKVKLPL 364
           L+   FAI++ FL  F +   + R +SH G  V +PL
Sbjct: 126 LSIKFFAILVCFLVAFLLNVQSIRYYSHTGILVNVPL 162


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,912,810
Number of Sequences: 37544
Number of extensions: 299070
Number of successful extensions: 655
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)