Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0682
(543 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 131 7e-37
SB_56| Best HMM Match : Actin (HMM E-Value=0) 125 3e-29
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 124 4e-29
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 124 5e-29
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 124 5e-29
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 123 8e-29
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 101 4e-22
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 61 1e-16
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 68 6e-12
SB_54| Best HMM Match : Actin (HMM E-Value=0) 67 1e-11
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 58 5e-09
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 56 2e-08
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 39 0.002
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 33 0.11
SB_15553| Best HMM Match : SCP (HMM E-Value=1.1e-16) 30 1.1
SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 29 1.9
SB_32741| Best HMM Match : Filament (HMM E-Value=0.39) 29 2.5
SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_52295| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_15981| Best HMM Match : Defensin_2 (HMM E-Value=1.1) 27 7.5
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 131 bits (316), Expect(2) = 7e-37
Identities = 60/95 (63%), Positives = 72/95 (75%)
Frame = +1
Query: 85 KLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEAFEATGYSVKYP 264
K G+ K Q TIAIKE+AKVG++S R K VEDLDFFIGDEA + Y+ K+P
Sbjct: 242 KRGYDLAKAVQSNTQGTIAIKESAKVGNKSLGRSAKGVEDLDFFIGDEAIDKPSYATKWP 301
Query: 265 VRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLM 369
+RH IVEDWDLMER+ EQC+FKYLRAEPEDH+FL+
Sbjct: 302 IRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
Score = 40.3 bits (90), Expect(2) = 7e-37
Identities = 19/26 (73%), Positives = 20/26 (76%)
Frame = +1
Query: 466 AVLALAASWKSRTSAERTFTGIVVDS 543
AVLALAASW SR ERT TG V+DS
Sbjct: 337 AVLALAASWTSRQVGERTLTGCVIDS 362
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 125 bits (301), Expect = 3e-29
Identities = 70/171 (40%), Positives = 99/171 (57%), Gaps = 1/171 (0%)
Frame = +1
Query: 34 MGDHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDF 213
M D + A V+D G+G K GFAG+ P+ + PS VG + + + D
Sbjct: 1 MEDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDS 52
Query: 214 FIGDEAFEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNT 390
++GDEA G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PLN
Sbjct: 53 YVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNP 112
Query: 391 PENREYLAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDS 543
NRE + +IMFE+FN P +Y+A+QAVL+L AS ++ TGIV+DS
Sbjct: 113 KANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRT--------TGIVMDS 155
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 124 bits (300), Expect = 4e-29
Identities = 70/171 (40%), Positives = 99/171 (57%), Gaps = 1/171 (0%)
Frame = +1
Query: 34 MGDHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDF 213
M D + A V+D G+G K GFAG+ P+ + PS VG + + + D
Sbjct: 1 MEDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDS 52
Query: 214 FIGDEAFEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNT 390
++GDEA G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PLN
Sbjct: 53 YVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNP 112
Query: 391 PENREYLAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDS 543
NRE + +IMFE+FN P +Y+A+QAVL+L AS ++ TGIV+DS
Sbjct: 113 KANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRT--------TGIVMDS 155
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 124 bits (299), Expect = 5e-29
Identities = 69/169 (40%), Positives = 98/169 (57%), Gaps = 1/169 (0%)
Frame = +1
Query: 40 DHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFI 219
D + A V+D G+G K GFAG+ P+ + PS VG + + + D ++
Sbjct: 4 DEIAALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYV 55
Query: 220 GDEAFEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPE 396
GDEA G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PLN
Sbjct: 56 GDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 115
Query: 397 NREYLAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDS 543
NRE + +IMFE+FN P +Y+A+QAVL+L AS ++ TGIV+DS
Sbjct: 116 NREKMTQIMFETFNSPAMYVAIQAVLSLYASGRT--------TGIVMDS 156
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 124 bits (299), Expect = 5e-29
Identities = 70/169 (41%), Positives = 98/169 (57%), Gaps = 1/169 (0%)
Frame = +1
Query: 40 DHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFI 219
D + A VID G+G K GFAG+ P+ + PS VG + + + D ++
Sbjct: 4 DDIAALVIDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYV 55
Query: 220 GDEAFEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPE 396
GDEA G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PLN
Sbjct: 56 GDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 115
Query: 397 NREYLAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDS 543
NRE + +IMFE+FN P +Y+A+QAVL+L AS ++ TGIV+DS
Sbjct: 116 NREKMTQIMFETFNSPAMYVAIQAVLSLYASGRT--------TGIVMDS 156
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 123 bits (297), Expect = 8e-29
Identities = 69/169 (40%), Positives = 98/169 (57%), Gaps = 1/169 (0%)
Frame = +1
Query: 40 DHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFI 219
D + A V+D G+G K GFAG+ P+ + PS VG + + + D ++
Sbjct: 4 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYV 55
Query: 220 GDEAFEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPE 396
GDEA G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PLN
Sbjct: 56 GDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 115
Query: 397 NREYLAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDS 543
NRE + +IMFE+FN P +Y+A+QAVL+L AS ++ TGIV+DS
Sbjct: 116 NREKMTQIMFETFNSPAMYVAIQAVLSLYASGRT--------TGIVMDS 156
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 101 bits (242), Expect = 4e-22
Identities = 64/168 (38%), Positives = 93/168 (55%), Gaps = 6/168 (3%)
Frame = +1
Query: 58 VIDVGTGYTKLGFAGNKEPQFIIPSTIA---IKETAKVGDQSTRRMTKAVEDLDFFIGDE 228
V D GTG+ K G+AG+ P I PS + I+ + KVGD +E D +GDE
Sbjct: 10 VCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGD---------IEVKDLMVGDE 60
Query: 229 AFEATGY-SVKYPVRHGIVEDWDLMERYIEQCVF--KYLRAEPEDHHFLMTEPPLNTPEN 399
A + V YP+ +GIV +WD M +++ F + +P + L+TEPPLN +N
Sbjct: 61 ASQLRYMLEVNYPMDNGIVRNWDDM-KHVWDYTFGESKMNIDPRNTKVLLTEPPLNPMKN 119
Query: 400 REYLAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDS 543
RE + E+MFE++ G+YIA+QAVL L A+ TG+V+DS
Sbjct: 120 REKMIEVMFENYQFEGVYIAIQAVLTL--------YAQGLLTGVVIDS 159
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 61.3 bits (142), Expect(2) = 1e-16
Identities = 35/92 (38%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Frame = +1
Query: 34 MGDHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDF 213
M D + A VID G+G K GFAG+ P+ + PS VG + + + D
Sbjct: 1 MDDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDS 52
Query: 214 FIGDEAFEATG-YSVKYPVRHGIVEDWDLMER 306
++GDEA G ++KYP+ HGIV +WD ME+
Sbjct: 53 YVGDEAQSKRGILTLKYPIEHGIVTNWDDMEK 84
Score = 42.3 bits (95), Expect(2) = 1e-16
Identities = 23/49 (46%), Positives = 34/49 (69%)
Frame = +1
Query: 397 NREYLAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDS 543
N + + +IMFE+FN P +Y+A+QAVL+L AS ++ TGIV+DS
Sbjct: 78 NWDDMEKIMFETFNSPAMYVAIQAVLSLYASGRT--------TGIVMDS 118
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 67.7 bits (158), Expect = 6e-12
Identities = 29/79 (36%), Positives = 48/79 (60%)
Frame = +1
Query: 262 PVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREYLAEIMFESFNV 441
P++ G++EDWDL E+ ++ K ++++ H LM+E NT RE L E+MFE +NV
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYNV 62
Query: 442 PGLYIAVQAVLALAASWKS 498
P ++ +VL A+ +S
Sbjct: 63 PAFFLCKNSVLTAFANGRS 81
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 66.9 bits (156), Expect = 1e-11
Identities = 32/58 (55%), Positives = 41/58 (70%)
Frame = +1
Query: 325 FKYLRAEPEDHHFLMTEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLALAASWKS 498
F LR ED L+TE PLN NRE + ++MFESFNVP +Y+AVQAV+AL AS ++
Sbjct: 2136 FDQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQAVMALYASGRT 2193
Score = 27.1 bits (57), Expect = 9.9
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +1
Query: 58 VIDVGTGYTKLGFAGNKEPQFIIPSTI 138
VID G+G+ K G + ++ P+ + P+ +
Sbjct: 2098 VIDNGSGFCKAGLSTDESPRVVFPAIV 2124
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 58.0 bits (134), Expect = 5e-09
Identities = 30/63 (47%), Positives = 43/63 (68%)
Frame = +1
Query: 355 HHFLMTEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIV 534
H L+TE PLN NRE AE+ FE+FNVP L+I++QAVL+L A+ ++ TG+V
Sbjct: 127 HPVLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQAVLSLYATGRT--------TGVV 178
Query: 535 VDS 543
+D+
Sbjct: 179 LDA 181
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 56.0 bits (129), Expect = 2e-08
Identities = 26/41 (63%), Positives = 31/41 (75%)
Frame = +1
Query: 136 IAIKETAKVGDQSTRRMTKAVEDLDFFIGDEAFEATGYSVK 258
IAIKE+AKVG++S R K VEDLDFFIGDEA + Y+ K
Sbjct: 2 IAIKESAKVGNKSLGRSAKGVEDLDFFIGDEAIDKPSYATK 42
Score = 42.3 bits (95), Expect = 2e-04
Identities = 20/29 (68%), Positives = 22/29 (75%)
Frame = +1
Query: 457 AVQAVLALAASWKSRTSAERTFTGIVVDS 543
A +AVLALAASW SR ERT TG V+DS
Sbjct: 40 ATKAVLALAASWTSRQVGERTLTGCVIDS 68
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 39.1 bits (87), Expect = 0.002
Identities = 21/42 (50%), Positives = 29/42 (69%)
Frame = +1
Query: 418 IMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDS 543
IMFE+FN P +Y+A+QAVL+L AS ++ TG+V DS
Sbjct: 1 IMFEAFNSPAVYVAIQAVLSLYASGRT--------TGVVFDS 34
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 33.5 bits (73), Expect = 0.11
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = +1
Query: 52 ACVIDVGTGYTKLGFAGNKEPQFIIPSTI 138
A V+D G G +K+GFAG++ P+ I P+ +
Sbjct: 702 AIVLDNGCGISKIGFAGDRVPRIIQPAVV 730
>SB_15553| Best HMM Match : SCP (HMM E-Value=1.1e-16)
Length = 141
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +1
Query: 370 TEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLA 477
T PP N P E +A++M++S + G+ I+ V+A
Sbjct: 88 TNPPANAPAGTEEVAQLMWQSTSAVGVGISGNVVVA 123
>SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1913
Score = 29.9 bits (64), Expect = 1.4
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = -1
Query: 402 SVFWSVERRLGH*EMMIFGFRTEILKHALFDVPFH*IPVFYDTVAHRILYRVSCGFKSF 226
SVF +R+ I+ ++I H DVP +PVF D + R Y ++ G K +
Sbjct: 70 SVFRRPRKRVDSFSHAIYEAASKIFLHLKGDVPSSQLPVFDDDLERRRAYSMAFGAKRY 128
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 58 VIDVGTGYTKLGFAGNKEPQFIIPSTI 138
VIDVG+ K+GFAG+ P+ + P +
Sbjct: 1360 VIDVGSHMWKVGFAGDDAPKGVFPPIV 1386
>SB_32741| Best HMM Match : Filament (HMM E-Value=0.39)
Length = 1814
Score = 29.1 bits (62), Expect = 2.5
Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 2/95 (2%)
Frame = +1
Query: 70 GTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEAFEATGY 249
GT KL F E I + + + Q + +A+ +L+ + F T Y
Sbjct: 1230 GTTLEKLTFGSVLESADQIVTHADVLKELNSRAQGEVSIREALRELELWGAGAVFSLTSY 1289
Query: 250 SVKYPVRHGIVEDWDLMERYI--EQCVFKYLRAEP 348
S + I++DW + + QC+ + L+ P
Sbjct: 1290 SDSHEKELSIIKDWKELVNQVGDNQCLLQSLKDSP 1324
>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6753
Score = 29.1 bits (62), Expect = 2.5
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +3
Query: 261 SCAPRYRRRLGFNGKVHRTVRV*VSPCGTRRSSFLN 368
+C PRYR GFN + RTV V PC S ++
Sbjct: 2331 TCTPRYR---GFNCTILRTVCTDVQPCDKGNCSMIS 2363
>SB_52295| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1325
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -1
Query: 285 FYDTVAHRILYRVSCGFKSFIT--DEKIQIFDSLSHPPSTLIA 163
F T I Y + C F +F D K IFD SHP +++A
Sbjct: 1192 FDSTDYQPIEYNIDCKFDTFSATIDVKKTIFDLQSHPTDSIVA 1234
>SB_15981| Best HMM Match : Defensin_2 (HMM E-Value=1.1)
Length = 890
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +1
Query: 235 EATGYSVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHF 363
E + S+ R G++E W +M Y Q + R ED HF
Sbjct: 497 ETSSDSIPRSPRRGMLEFWLVMRIYDNQVDIYFHRRNSEDWHF 539
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,772,059
Number of Sequences: 59808
Number of extensions: 365305
Number of successful extensions: 862
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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