Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0680
         (605 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    24   0.86 
X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          21   8.1  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   8.1  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           21   8.1  

>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 24.2 bits (50), Expect = 0.86
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 372 RKDLVQLFLVLYGTDVSPRRFEAVEACV 289
           + DL+ +FL L   +    R  AVEACV
Sbjct: 204 KTDLIPMFLSLTQDEQDSVRLLAVEACV 231


>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 224 SPILQLSTLVGMRREYIQPTRPTHASTA 307
           S +LQL T+  ++    Q T+PT    A
Sbjct: 64  SSVLQLPTVTEIQETQPQRTKPTAGKRA 91


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +2

Query: 185 QSVSSVSTLNNGSSPIL 235
           QSV   S L N S+PIL
Sbjct: 135 QSVEKSSKLKNKSAPIL 151


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 224 SPILQLSTLVGMRREYIQPTRPTHASTA 307
           S +LQL T+  ++    Q T+PT    A
Sbjct: 55  SSVLQLPTVTEIQETQPQRTKPTAGKRA 82


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,026
Number of Sequences: 336
Number of extensions: 3570
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15352827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)