Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0680
(605 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo... 36 0.003
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz... 36 0.005
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 29 0.40
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 28 0.92
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr... 28 0.92
SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po... 27 1.6
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 27 2.1
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 25 8.6
SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual 25 8.6
>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 36.3 bits (80), Expect = 0.003
Identities = 36/180 (20%), Positives = 67/180 (37%), Gaps = 9/180 (5%)
Frame = +1
Query: 91 GKWHKITYKQYQDRVRIIAKAFLKLGLDRYHSVSILGFNSEQWFIADLXXXXXXXXXXXX 270
G + I++ + + + + G+ ++ S +WF
Sbjct: 96 GPYEYISFNKVYEIALALGSGLVASGITSETTMLFFAATSAKWFTTAQGCSSQAIPIVTA 155
Query: 271 XTTNSADACFHCLESSRANICAVQDKKQLDKILSVKHKLPLLKAIVQWEGP-------VD 429
T D + L+ ++ D + K+L + +K IV P V
Sbjct: 156 YETLGEDGIYTSLDECKSR-AIFTDPNLIPKLLGPLKQSTWVKLIVCSSTPSEDLVELVK 214
Query: 430 TSIPG--IYSWDQLLEIGAKEPDTQLNEILKSIAVNECCTLVYTSGTVGPPKAVMLSHDN 603
++ P I ++D LL +G ++P ++ C +YTSG+ G PK V+L H N
Sbjct: 215 STAPDVEIITYDNLLSLGKEKPQPP-----HPPKADDICCYMYTSGSTGKPKGVVLLHRN 269
>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 676
Score = 35.9 bits (79), Expect = 0.005
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +1
Query: 532 ECCTLVYTSGTVGPPKAVMLSHDN 603
E C ++YTSG+ G PK V+LSH N
Sbjct: 240 EICCIMYTSGSTGLPKGVILSHKN 263
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 29.5 bits (63), Expect = 0.40
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = +1
Query: 421 PVDTSIPGIYSWDQLLEIGAKE--PDTQLNEILKSIAVNECCTLVYTSGTVGPPKAVMLS 594
P +T I + +++ +EI + P E L S+A ++YTSG+ G PK V +S
Sbjct: 326 PNNTIILKVPEYNESMEIKVDDEIPPFPFPESLDSVAY-----VLYTSGSTGNPKGVAIS 380
Query: 595 H 597
H
Sbjct: 381 H 381
Score = 28.3 bits (60), Expect = 0.92
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 502 NEILKSIAVNECCTLVYTSGTVGPPKAVMLSHDN 603
N K + ++YTSG+ G PK L+H N
Sbjct: 2861 NPYTKDFEDSNLAYVLYTSGSTGKPKGCCLTHHN 2894
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 28.3 bits (60), Expect = 0.92
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +1
Query: 442 GIYSWDQLLEIGAKEPDTQL-NEILKSIAVNE 534
G SWDQLLEI K D + N L++ V E
Sbjct: 723 GAKSWDQLLEIYTKTNDPYVRNSCLRAFGVTE 754
>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 28.3 bits (60), Expect = 0.92
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 544 LVYTSGTVGPPKAVMLSHDN 603
+++TSGT G PK V L+H N
Sbjct: 166 VLHTSGTTGRPKVVPLTHKN 185
>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 586
Score = 27.5 bits (58), Expect = 1.6
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = -3
Query: 516 FQNFVQLRVWLLRSYL**LVPTIYSRYGGINRSFPLHDGFQQGKLVLHRKDLVQLFL 346
+ F LRV L R Y LVP + ++ ++ + + +++ RK L+QLFL
Sbjct: 104 YSEFASLRVQLSRLYPTCLVPPLPDKHKIMDYLINVTKNQRMSRMLEERKRLLQLFL 160
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 72 GHKKG*WEMAQNHLQAIPGS 131
GH +G WE+A +HL+ I G+
Sbjct: 472 GHIEGVWEIAADHLRLISGA 491
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 25.0 bits (52), Expect = 8.6
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +3
Query: 213 TMVHRRSCSYPRWW 254
T V+ SC YPR+W
Sbjct: 224 TNVYNTSCEYPRFW 237
>SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 415
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +1
Query: 343 DKKQLDKILSVKHKLPLLKAIVQWEGPVDTSI 438
+K L + V+H+ PL A V W P I
Sbjct: 345 EKSALSCFVRVRHQQPLQPAKVTWRNPESVKI 376
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,707,333
Number of Sequences: 5004
Number of extensions: 57749
Number of successful extensions: 172
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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