Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0679
         (604 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces...    28   1.2  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   2.1  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           25   6.4  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    25   6.4  
SPBC56F2.11 |met6||homoserine O-acetyltransferase|Schizosaccharo...    25   8.5  
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    25   8.5  

>SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 366

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 111 DNSRNSSCSRIQNDVSWFTNSDGTTNYC 194
           DNS +S CS+  N  +  T SD   + C
Sbjct: 7   DNSADSKCSKCDNKATVLTKSDAVCDSC 34


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +3

Query: 54   ITFSFCGSPERFQLSHSKGDNSRNSSCSRIQNDVS 158
            I FSF GS + F L HSK      SSC+ + N  S
Sbjct: 937  IQFSFQGSSQNFSLEHSK---FLMSSCAVLNNQNS 968


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = +1

Query: 106 REIIVETHRAPEFKMMSAGSQIQMAPQTTVNTGQPLHSQDSNM 234
           +++I +T   PE    SA   ++   +  V   +PL ++D+N+
Sbjct: 91  KDLIFKTPVIPETNFWSACKNLEKDKKVIVPLAEPLSAKDTNL 133


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +3

Query: 75  SPERFQLSHSKGDNSRNSSCSRIQNDVSWFTNSDGTTNYCQHGATATQSGLQYE 236
           SP +   + + G NS+ S+ S++Q  VS   +S     +C+        G+ YE
Sbjct: 838 SPSKVSATLNAG-NSQASTSSKLQQVVSMSGHSPDFLAWCKISLKGLNEGVNYE 890


>SPBC56F2.11 |met6||homoserine
           O-acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 489

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +1

Query: 442 HNSSDKNIREYFSKHPSSSPVRHAGAKSPSPQGANYP 552
           HN  ++N RE   +   SSP   +   SP+   ++ P
Sbjct: 278 HNEGNRNRRERPCRSNGSSPTSESALNSPASSVSSLP 314


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1151

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/48 (27%), Positives = 20/48 (41%)
 Frame = +1

Query: 223 DSNMSTGSSHSDKEVDALTPEKSVAMRGSTAASGTVLVAPGGATPTIT 366
           D  +S   SHS      L   +  A   S + S   +  P G +P+I+
Sbjct: 514 DIQLSASDSHSPNSKSTLKSVEGSAFSMSKSPSVLSMTTPSGVSPSIS 561


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,298,287
Number of Sequences: 5004
Number of extensions: 41765
Number of successful extensions: 162
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)