Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0679
         (604 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0094 - 22770181-22770453,22770657-22770866,22771069-227713...    32   0.40 
03_06_0520 - 34487664-34488274,34488785-34488974,34489585-344910...    31   0.93 
10_08_0483 + 18230383-18230874                                         30   1.2  
12_01_0107 - 843820-846335,846400-846511                               29   3.7  
05_07_0298 + 29072111-29072169,29072281-29072518,29072660-290727...    28   5.0  
11_05_0107 + 19119259-19119906,19121154-19121399,19121405-19121872     28   6.5  
06_01_0605 + 4373697-4373872,4374840-4374876,4375296-4375399,437...    28   6.5  
02_04_0327 - 22063453-22063725,22064093-22064404,22064724-220648...    28   6.5  

>04_04_0094 -
           22770181-22770453,22770657-22770866,22771069-22771380,
           22771767-22771937,22772078-22772184,22772541-22772622,
           22773202-22773330
          Length = 427

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 17/65 (26%), Positives = 31/65 (47%)
 Frame = +1

Query: 163 SQIQMAPQTTVNTGQPLHSQDSNMSTGSSHSDKEVDALTPEKSVAMRGSTAASGTVLVAP 342
           S I  + +  V T + +H+Q     TG++   ++    + EKS++       SG+ + A 
Sbjct: 343 SNITFSEEPVVKTSKKIHNQKFQELTGNNIFKEDATPASAEKSLSSAKLKEMSGSDIFAD 402

Query: 343 GGATP 357
           G A P
Sbjct: 403 GAAAP 407


>03_06_0520 -
           34487664-34488274,34488785-34488974,34489585-34491045,
           34491149-34491163
          Length = 758

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +3

Query: 63  SFCGSPERFQLSHSKGDNSRNSSCSR---IQNDVSWFTNSDGTTNYCQH 200
           SF   P R Q+S    D+ RN+SC+R   ++   S F + D T N   H
Sbjct: 400 SFWDKPTRQQISSPTQDDLRNASCARYHTLEQHRSSFPSYDNTRNNSWH 448


>10_08_0483 + 18230383-18230874
          Length = 163

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +2

Query: 374 RGSENEKEMKELVVVGVEEESNAITRQIKIYENISQSTPRPV 499
           RG   +K+ K+LV V + +E     R  ++   +++ TPRP+
Sbjct: 64  RGKRRKKKRKKLVTVKLSDELMGYLRTKEVMAYLARETPRPL 105


>12_01_0107 - 843820-846335,846400-846511
          Length = 875

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 172 QMAPQTTVNTGQPLHSQDSNMSTGSSHSDK 261
           ++AP T  N     H++ SN+STG S ++K
Sbjct: 51  RVAPATNTNAESGEHNEFSNISTGDSQNNK 80


>05_07_0298 +
           29072111-29072169,29072281-29072518,29072660-29072740,
           29072831-29072897,29073055-29073191,29073319-29073321
          Length = 194

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +3

Query: 78  PERFQLSHSKGDNSRNSSCSRIQNDVSWFTNSDGTTNYCQ 197
           P   Q  H+KG + R S CS++  +   F NS G T  C+
Sbjct: 99  PGNEQRKHAKGCSCRKSKCSKLYCEC--FKNSVGCTAKCK 136


>11_05_0107 + 19119259-19119906,19121154-19121399,19121405-19121872
          Length = 453

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 478 SKHPSSSPVRHAGAKSPSPQG 540
           +KHP+  PVR   A+ P P G
Sbjct: 304 TKHPADDPVRQRRARVPQPDG 324


>06_01_0605 +
           4373697-4373872,4374840-4374876,4375296-4375399,
           4375942-4376137,4376385-4376451,4376895-4376998,
           4377090-4377174,4377309-4377369,4377694-4377825,
           4377924-4377993,4379261-4379413,4379583-4379694,
           4379779-4379920,4380023-4380140,4380862-4380957,
           4381061-4381189
          Length = 593

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = +2

Query: 374 RGSENEKEMKELVVVGVEEESNAITRQIKIYENISQST--PRPVL*GMLELNPPRLKAPI 547
           R  ++ +     V V VEE + A T++IKI+EN +      R V       NP RLK  +
Sbjct: 523 RALDDMENANAQVEVSVEEVTKARTQKIKIFENRAHEVGRERQVFVDFFS-NPERLKNQV 581

Query: 548 ILCTHR 565
              T R
Sbjct: 582 RELTSR 587


>02_04_0327 -
           22063453-22063725,22064093-22064404,22064724-22064859,
           22065901-22065974,22066084-22066221
          Length = 310

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = +1

Query: 163 SQIQMAPQTTVNTGQPLHSQDSNMSTGSSHSDKEVDALTPEKSVAMRGSTAASGTVLVAP 342
           S I    +  V T + +H+Q  +  TG++   +E    + EKS++       SG+ + A 
Sbjct: 226 SNIMFGEEPAVKTAKKIHNQKFHELTGNNIFKEEAPPGSAEKSLSTAKLKEMSGSNIFAD 285

Query: 343 G 345
           G
Sbjct: 286 G 286


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,307,961
Number of Sequences: 37544
Number of extensions: 285585
Number of successful extensions: 950
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)