Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0679
         (604 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    24   1.00 
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    23   2.3  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    23   2.3  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    23   2.3  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    23   2.3  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    23   2.3  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   3.0  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   4.0  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   9.3  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   9.3  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 24.2 bits (50), Expect = 1.00
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = +1

Query: 289 SVAMRGSTAASGTVLVAPGGATPTIT 366
           SVA    TA     LVAPG   PT T
Sbjct: 405 SVARFAETALGAAALVAPGMEEPTNT 430


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 61  NVINNTDHLNNKYNK 17
           +++NNT H NN Y K
Sbjct: 306 SLLNNTIHNNNNYKK 320


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 61  NVINNTDHLNNKYNK 17
           +++NNT H NN Y K
Sbjct: 317 SLLNNTIHNNNNYKK 331


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 61  NVINNTDHLNNKYNK 17
           +++NNT H NN Y K
Sbjct: 317 SLLNNTIHNNNNYKK 331


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 61  NVINNTDHLNNKYNK 17
           +++NNT H NN Y K
Sbjct: 306 SLLNNTIHNNNNYKK 320


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -1

Query: 52  NNTDHLNNKYNKAKNK 5
           N T H NN YN   NK
Sbjct: 309 NKTIHNNNNYNNYNNK 324


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -2

Query: 153 HHFEFWSTMSFYYYLPC 103
           H    W  + F Y+LPC
Sbjct: 326 HEMSEWVKVVFLYWLPC 342


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 521 NPPRLKAPIILCTHRHLHHY 580
           +PP  +   I  +H HLHH+
Sbjct: 60  SPPEHRDLPIYQSHHHLHHH 79


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 52  NNTDHLNNKYNK 17
           NN ++ NN YNK
Sbjct: 99  NNNNYNNNNYNK 110


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 52  NNTDHLNNKYNK 17
           NN ++ NN YNK
Sbjct: 99  NNNNYNNNNYNK 110


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,747
Number of Sequences: 438
Number of extensions: 3282
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)