Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0679
         (604 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g77110.1 68414.m08981 auxin transport protein, putative simil...    31   0.78 
At3g48870.1 68416.m05338 ATP-dependent Clp protease ATP-binding ...    29   2.4  
At5g24380.1 68418.m02874 transporter, putative similar to iron-p...    28   5.5  
At5g08560.1 68418.m01018 transducin family protein / WD-40 repea...    27   7.2  
At2g10070.2 68415.m01044 expressed protein very low similarity t...    27   7.2  
At2g10070.1 68415.m01045 expressed protein very low similarity t...    27   7.2  
At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp...    27   9.6  
At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp...    27   9.6  
At1g72610.1 68414.m08396 germin-like protein (GER1) identical to...    27   9.6  
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex...    27   9.6  

>At1g77110.1 68414.m08981 auxin transport protein, putative similar
           to auxin transport protein EIR1 GI:3377507 from
           [Arabidopsis thaliana]
          Length = 570

 Score = 30.7 bits (66), Expect = 0.78
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +1

Query: 238 TGSSHSDKEVDALTPEKSVAMRGSTAASGTVLVAPGGAT 354
           +G  H+ K+++   PEK ++ R +  A+     A GGA+
Sbjct: 344 SGQRHAAKDINGSVPEKEISFRDALKAAPQATAAGGGAS 382


>At3g48870.1 68416.m05338 ATP-dependent Clp protease ATP-binding
           subunit (ClpC) identical to AtClpC GI:5360574 from
           [Arabidopsis thaliana]; contains Pfam profiles  PF02861:
            Clp amino terminal domain and PF02151:  UvrB/uvrC motif
          Length = 952

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 18/59 (30%), Positives = 25/59 (42%)
 Frame = +1

Query: 184 QTTVNTGQPLHSQDSNMSTGSSHSDKEVDALTPEKSVAMRGSTAASGTVLVAPGGATPT 360
           Q T    + + SQD  M+   SH D+E++      +V  RG   A        GG T T
Sbjct: 537 QITKEKNEAVRSQDFEMA--GSHRDREIELKAEIANVLSRGKEVAKAENEAEEGGPTVT 593


>At5g24380.1 68418.m02874 transporter, putative similar to
           iron-phytosiderophore transporter protein yellow stripe
           1 [Zea mays] GI:10770865; contains Pfam profile PF03169:
           OPT oligopeptide transporter protein
          Length = 652

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +1

Query: 199 TGQPLHSQDSNMSTGSSHSDKEVDALTPEKSVAMRGS 309
           TG+  HS+ S  ++ S++S KE D L  E  V +R S
Sbjct: 329 TGRSFHSRLSKTNSISTYSTKESDNLKRENEVFVRES 365


>At5g08560.1 68418.m01018 transducin family protein / WD-40 repeat
           family protein contains 7 WD-40 repeats (PF00400);
           similar to will die slowly protein (WDS) (SP:Q9V3J8)
           [Drosophila melanogaster]
          Length = 589

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 277 LKHQLLYHYEMTLCSYWSPDCVAVAPC 197
           LKH L+ H++  +   WSPD   V  C
Sbjct: 311 LKHTLVGHHKPVIAILWSPDDRQVLTC 337


>At2g10070.2 68415.m01044 expressed protein very low similarity to
           AHM1 [Triticum aestivum] GI:6691467
          Length = 208

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +1

Query: 487 PSSSPVRHAGAKSPSPQGANY 549
           PSSSP++++ A  PS QG N+
Sbjct: 85  PSSSPLQNSHASYPSSQGNNF 105


>At2g10070.1 68415.m01045 expressed protein very low similarity to
           AHM1 [Triticum aestivum] GI:6691467
          Length = 150

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +1

Query: 487 PSSSPVRHAGAKSPSPQGANY 549
           PSSSP++++ A  PS QG N+
Sbjct: 85  PSSSPLQNSHASYPSSQGNNF 105


>At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein contains Pfam domain PF01805:
           Surp module
          Length = 844

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +1

Query: 181 PQTTVNTGQPLHSQDSNMSTGSSHSDKEVDALTPEKSVAMRGSTAAS 321
           PQ  + TG+P+      +    S+   +   L      ++ GSTAAS
Sbjct: 480 PQLGILTGKPMDETSQTLGNDVSYPSSKSPDLAKSTGQSLSGSTAAS 526


>At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein contains Pfam domain PF01805:
           Surp module
          Length = 843

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +1

Query: 181 PQTTVNTGQPLHSQDSNMSTGSSHSDKEVDALTPEKSVAMRGSTAAS 321
           PQ  + TG+P+      +    S+   +   L      ++ GSTAAS
Sbjct: 480 PQLGILTGKPMDETSQTLGNDVSYPSSKSPDLAKSTGQSLSGSTAAS 526


>At1g72610.1 68414.m08396 germin-like protein (GER1) identical to
           germin-like protein subfamily 3 member 1 SP|P94040;
           contains Pfam profile: PF01072 Germin family
          Length = 208

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 365 VMVGVAPPGATRTVPDAAVEPRIATDFSGV 276
           V  G+  PG T  + +AAV P  A  F G+
Sbjct: 50  VFSGLGTPGNTTNIINAAVTPAFAAQFPGL 79


>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
           extensin family protein contains similarity to disease
           resistance protein GI:3894383 from [Lycopersicon
           esculentum]; contains leucine-rich repeats,
           Pfam:PF00560; contains proline rich extensin domains,
           INTERPRO:IPR002965
          Length = 847

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
 Frame = +1

Query: 121 ETHRAPEFKMMSAGSQIQMAPQTTVNTGQ-PLHSQDSNMSTGSSHSD--KEVDALTPEKS 291
           E+++AP    + A + +Q AP T+  T Q P  S +SN S   + +   + V A TP  S
Sbjct: 709 ESYQAPNLSPVQAPTPVQ-APTTSSETSQVPTPSSESNQSPSQAPTPILEPVHAPTP-NS 766

Query: 292 VAMRGSTAASGTV 330
             ++  T +S  V
Sbjct: 767 KPVQSPTPSSEPV 779


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,159,959
Number of Sequences: 28952
Number of extensions: 225642
Number of successful extensions: 781
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)