Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0678
(557 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|... 200 1e-52
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 26 3.3
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz... 26 4.3
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 4.3
SPBC216.03 |||conserved fungal protein|Schizosaccharomyces pombe... 26 4.3
SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom... 26 4.3
SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomy... 26 4.3
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ... 26 4.3
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc... 25 5.7
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 25 10.0
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 25 10.0
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 25 10.0
SPAC16E8.15 |tif45|tif1|translation initiation factor eIF4E, 4F ... 25 10.0
>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 200 bits (488), Expect = 1e-52
Identities = 88/140 (62%), Positives = 107/140 (76%)
Frame = +3
Query: 138 TTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRERIPERVVHAKGAGAFGYFEV 317
TT +G P+ A VGK GP LLQD + +D FDRERIPERVVHAKG+GAFG FE
Sbjct: 13 TTNTGCPIFNPMAAARVGKGGPVLLQDSHLIDVFQHFDRERIPERVVHAKGSGAFGEFEC 72
Query: 318 THDITKYSAAKVFESIGKRTPIAVRFSTVGGESGSADTVREPRGFAVKFYTDDGVWDLVG 497
T DITKY+ +F +GK+TP+ RFSTVGGE G+ DT R+PRGFA+KFYTD+G++D+VG
Sbjct: 73 TDDITKYTKHTMFSKVGKKTPMVARFSTVGGERGTPDTARDPRGFALKFYTDEGIFDMVG 132
Query: 498 NNTPIFFIRDPTLFPSFIHT 557
NNTP+FF+RDP FP FIHT
Sbjct: 133 NNTPVFFLRDPAKFPLFIHT 152
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 26.2 bits (55), Expect = 3.3
Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -3
Query: 456 QQNLEVHEQYQQIHSLHQLLRI*QQSVSFCL-WTQILWQHCTW 331
++ E +E+Y+Q+ + SV + + W Q+L+ CTW
Sbjct: 278 ERKRENYEEYKQVDRIVAKHLNSDGSVEYLVKWKQLLYDFCTW 320
>SPAC3A11.05c |kms1||meiotic spindle pole body protein
Kms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 25.8 bits (54), Expect = 4.3
Identities = 11/27 (40%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = -3
Query: 489 NPTLHHQYRTLQ-QNLEVHEQYQQIHS 412
N + ++Q +TL+ QNL +H+ +Q+I S
Sbjct: 247 NNSQNNQIKTLKAQNLNIHKNFQKIQS 273
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.8 bits (54), Expect = 4.3
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +3
Query: 354 FESIGKRTPIAVRFSTVGGESGSADTVREPRGFAVKFYTDDGVWDLVGNNT 506
F S+ + + FS G E +R+ F++K DGVW+L N T
Sbjct: 1199 FPSVYSKDNPNLLFSMTGFEVRILPKIRQNEEFSLK----DGVWNLTDNRT 1245
>SPBC216.03 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 247
Score = 25.8 bits (54), Expect = 4.3
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +3
Query: 231 DEMSSFDRERIPERVVHAKGAGAFGYFEVTHDITKYSAAKVFESI 365
++++ F E P+ V+ A GAG G E T + A KV++++
Sbjct: 59 NDIAQFLAEIHPDVVIFAAGAGGKGGPERTRAVDYEGAIKVYDAM 103
>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 25.8 bits (54), Expect = 4.3
Identities = 19/55 (34%), Positives = 26/55 (47%)
Frame = -2
Query: 397 ENLTAIGVLLPMDSNTLAALYLVMS*VTSKYPKAPAPLACTTRSGIRSLSKDDIS 233
+ + I L SNT A S V + Y K+P +A T R I+S +K IS
Sbjct: 294 DTVDIIRALKEYASNTSALAEFAKSTVKTLYSKSPTSIAVTNRL-IKSAAKWSIS 347
>SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 538
Score = 25.8 bits (54), Expect = 4.3
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +3
Query: 516 FIRDPTLFPSFIHT 557
+++DPTL P F+HT
Sbjct: 506 WVKDPTLTPKFLHT 519
>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 25.8 bits (54), Expect = 4.3
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -2
Query: 430 VSADPLSPPTVENLTAIGVLLPMDSNTL 347
VS +P + +NLTAIGV P+D+N +
Sbjct: 142 VSINPYNFSAFQNLTAIGV--PLDANNV 167
>SPAC11E3.06 |map1||MADS-box transcription factor
Map1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 25.4 bits (53), Expect = 5.7
Identities = 15/63 (23%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +3
Query: 84 TDQLINYKKTLKDSPGFIT-TKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRER 260
TDQ + K S ++ ++SG P+ + ++ +NGP+ ++++NF ++ +F +
Sbjct: 101 TDQNESQASQAKQSSAQLSDSESGYPLDHEE-MRISEENGPSHIENLNFFSDIDNFSKTS 159
Query: 261 IPE 269
E
Sbjct: 160 AEE 162
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 24.6 bits (51), Expect = 10.0
Identities = 8/30 (26%), Positives = 18/30 (60%)
Frame = +3
Query: 210 LQDVNFLDEMSSFDRERIPERVVHAKGAGA 299
+ V+ + + ++++E+ E + H K AGA
Sbjct: 270 ITSVSEFEALQAYEKEKFQEMIKHVKDAGA 299
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 24.6 bits (51), Expect = 10.0
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 444 RGFAVKFYTDDGVWDLVGNNTPI 512
+G+ V + T+ VWDLV N +
Sbjct: 65 KGYLVHWSTETAVWDLVMRNVGV 87
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 24.6 bits (51), Expect = 10.0
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 440 FTNSISRSTLSTNC*ESNSNRCPFAYGL 357
+TN +TL C SNS P+A GL
Sbjct: 635 YTNQNRTTTLDYQCSSSNSVVSPYASGL 662
>SPAC16E8.15 |tif45|tif1|translation initiation factor eIF4E, 4F
complex subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 218
Score = 24.6 bits (51), Expect = 10.0
Identities = 9/37 (24%), Positives = 18/37 (48%)
Frame = -3
Query: 516 RKWEYYFQLNPTLHHQYRTLQQNLEVHEQYQQIHSLH 406
R W +F + PT ++ LQ+N+ ++ +H
Sbjct: 42 RPWTLWFLMPPTPGLEWNELQKNIITFNSVEEFWGIH 78
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,439,316
Number of Sequences: 5004
Number of extensions: 49868
Number of successful extensions: 148
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -