Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0678
         (557 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g20630.1 68414.m02581 catalase 1 identical to catalase 1 GI:2...   180   4e-46
At4g35090.1 68417.m04984 catalase 2 identical to catalase 2 SP:P...   176   7e-45
At1g20620.2 68414.m02577 catalase 3 (SEN2) almost identical to c...   166   8e-42
At1g20620.1 68414.m02578 catalase 3 (SEN2) almost identical to c...   166   8e-42
At3g59480.1 68416.m06636 pfkB-type carbohydrate kinase family pr...    30   1.2  
At1g06020.1 68414.m00630 pfkB-type carbohydrate kinase family pr...    29   2.8  
At1g05460.1 68414.m00555 RNA helicase SDE3 (SDE3) identical to R...    29   2.8  
At4g00640.1 68417.m00088 hypothetical protein                          28   3.7  
At1g06070.1 68414.m00636 bZIP transcription factor, putative (bZ...    28   3.7  
At4g03000.2 68417.m00408 expressed protein contains similarity t...    27   6.4  
At4g03000.1 68417.m00407 expressed protein contains similarity t...    27   6.4  
At2g46830.2 68415.m05844 myb-related transcription factor (CCA1)...    27   6.4  
At2g46830.1 68415.m05843 myb-related transcription factor (CCA1)...    27   6.4  
At2g31390.1 68415.m03836 pfkB-type carbohydrate kinase family pr...    27   8.5  
At1g12430.1 68414.m01436 armadillo/beta-catenin repeat family pr...    27   8.5  

>At1g20630.1 68414.m02581 catalase 1 identical to catalase 1
           GI:2511725 from [Arabidopsis thaliana]
          Length = 492

 Score =  180 bits (439), Expect = 4e-46
 Identities = 85/145 (58%), Positives = 108/145 (74%)
 Frame = +3

Query: 120 DSPGFITTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRERIPERVVHAKGAGA 299
           DSP F TT SGAPV    +  TVG  GP LL+D + L+++++FDRERIPERVVHA+GA A
Sbjct: 13  DSP-FFTTNSGAPVWNNNSSLTVGTRGPILLEDYHLLEKLANFDRERIPERVVHARGASA 71

Query: 300 FGYFEVTHDITKYSAAKVFESIGKRTPIAVRFSTVGGESGSADTVREPRGFAVKFYTDDG 479
            G+FEVTHDIT+ ++A      G +TP+ VRFSTV  E GS +T+R+PRGFAVKFYT +G
Sbjct: 72  KGFFEVTHDITQLTSADFLRGPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREG 131

Query: 480 VWDLVGNNTPIFFIRDPTLFPSFIH 554
            +DLVGNN P+FF+RD   FP  +H
Sbjct: 132 NFDLVGNNFPVFFVRDGMKFPDMVH 156


>At4g35090.1 68417.m04984 catalase 2 identical to catalase 2
           SP:P25819, GI:17865693 from [Arabidopsis thaliana]
          Length = 492

 Score =  176 bits (429), Expect = 7e-45
 Identities = 83/145 (57%), Positives = 107/145 (73%)
 Frame = +3

Query: 120 DSPGFITTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRERIPERVVHAKGAGA 299
           +SP F TT SGAPV    +  TVG  GP LL+D + ++++++FDRERIPERVVHA+GA A
Sbjct: 13  NSP-FFTTNSGAPVWNNNSSMTVGPRGPILLEDYHLVEKLANFDRERIPERVVHARGASA 71

Query: 300 FGYFEVTHDITKYSAAKVFESIGKRTPIAVRFSTVGGESGSADTVREPRGFAVKFYTDDG 479
            G+FEVTHDI+  + A    + G +TP+ VRFSTV  E GS +T+R+PRGFAVKFYT +G
Sbjct: 72  KGFFEVTHDISNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREG 131

Query: 480 VWDLVGNNTPIFFIRDPTLFPSFIH 554
            +DLVGNN P+FFIRD   FP  +H
Sbjct: 132 NFDLVGNNFPVFFIRDGMKFPDMVH 156


>At1g20620.2 68414.m02577 catalase 3 (SEN2) almost identical to
           catalase 3 SP:Q42547, GI:3123188 from [Arabidopsis
           thaliana]; identical to catalase 3 (SEN2) mRNA, partial
           cds GI:3158369
          Length = 427

 Score =  166 bits (404), Expect = 8e-42
 Identities = 77/151 (50%), Positives = 105/151 (69%)
 Frame = +3

Query: 102 YKKTLKDSPGFITTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRERIPERVVH 281
           Y+ +   +  F TT  GAPV    +  T+G+ GP LL+D + ++++++F RERIPERVVH
Sbjct: 6   YRPSSAYNAPFYTTNGGAPVSNNISSLTIGERGPVLLEDYHLIEKVANFTRERIPERVVH 65

Query: 282 AKGAGAFGYFEVTHDITKYSAAKVFESIGKRTPIAVRFSTVGGESGSADTVREPRGFAVK 461
           A+G  A G+FEVTHDI+  + A    + G +TP+ VRFSTV  E  S +T+R+ RGFAVK
Sbjct: 66  ARGISAKGFFEVTHDISNLTCADFLRAPGVQTPVIVRFSTVVHERASPETMRDIRGFAVK 125

Query: 462 FYTDDGVWDLVGNNTPIFFIRDPTLFPSFIH 554
           FYT +G +DLVGNNTP+FFIRD   FP  +H
Sbjct: 126 FYTREGNFDLVGNNTPVFFIRDGIQFPDVVH 156


>At1g20620.1 68414.m02578 catalase 3 (SEN2) almost identical to
           catalase 3 SP:Q42547, GI:3123188 from [Arabidopsis
           thaliana]; identical to catalase 3 (SEN2) mRNA, partial
           cds GI:3158369
          Length = 492

 Score =  166 bits (404), Expect = 8e-42
 Identities = 77/151 (50%), Positives = 105/151 (69%)
 Frame = +3

Query: 102 YKKTLKDSPGFITTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRERIPERVVH 281
           Y+ +   +  F TT  GAPV    +  T+G+ GP LL+D + ++++++F RERIPERVVH
Sbjct: 6   YRPSSAYNAPFYTTNGGAPVSNNISSLTIGERGPVLLEDYHLIEKVANFTRERIPERVVH 65

Query: 282 AKGAGAFGYFEVTHDITKYSAAKVFESIGKRTPIAVRFSTVGGESGSADTVREPRGFAVK 461
           A+G  A G+FEVTHDI+  + A    + G +TP+ VRFSTV  E  S +T+R+ RGFAVK
Sbjct: 66  ARGISAKGFFEVTHDISNLTCADFLRAPGVQTPVIVRFSTVVHERASPETMRDIRGFAVK 125

Query: 462 FYTDDGVWDLVGNNTPIFFIRDPTLFPSFIH 554
           FYT +G +DLVGNNTP+FFIRD   FP  +H
Sbjct: 126 FYTREGNFDLVGNNTPVFFIRDGIQFPDVVH 156


>At3g59480.1 68416.m06636 pfkB-type carbohydrate kinase family
           protein contains Pfam profile: PF00294 pfkB family
           carbohydrate kinase
          Length = 326

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 111 TLKDSPGFITTKSGAPVGIKTAIQTVG 191
           +L D+PGFI    GAP  +  AI  +G
Sbjct: 29  SLADAPGFIKAPGGAPANVAIAISRLG 55


>At1g06020.1 68414.m00630 pfkB-type carbohydrate kinase family
           protein similar to fructokinase GI:2102693 from
           [Lycopersicon esculentum]
          Length = 345

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 111 TLKDSPGFITTKSGAPVGIKTAIQTVG 191
           +L +SPGF+    GAP  +  A+  +G
Sbjct: 29  SLSESPGFLKAPGGAPANVAIAVSRLG 55


>At1g05460.1 68414.m00555 RNA helicase SDE3 (SDE3) identical to RNA
           helicase SDE3 [Arabidopsis thaliana] GI:13811296
          Length = 1002

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +2

Query: 149 WSSCWNQNGDTNGGQEWS 202
           WS  WN NG T    EWS
Sbjct: 868 WSDGWNNNGGTKEKNEWS 885



 Score = 27.1 bits (57), Expect = 8.5
 Identities = 12/20 (60%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = +2

Query: 149 WSSCWNQNGDTNG-GQEWSS 205
           WS  W+ NG TNG  QE SS
Sbjct: 901 WSDGWDNNGGTNGINQEGSS 920


>At4g00640.1 68417.m00088 hypothetical protein 
          Length = 425

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
 Frame = +3

Query: 261 IPERVVHAK----GAGAFGYFEVTHDITKYSAAKVFESIGKRTPIAVRFSTVG---GESG 419
           +P R++ AK    G G   +++   D    SA +   ++  R+ + +     G   G   
Sbjct: 24  LPNRMISAKLCPKGLGGTRFWDPMIDSKVRSAIRSKRNVSYRSSLTLNADFNGRFYGHLL 83

Query: 420 SADTVREPRGFAVKFYTDDGVWDLVGNNTPIFF 518
            A     P GF +   + D V DLVGN+  + F
Sbjct: 84  PAKPQNVPLGFRLLCQSSDSVGDLVGNDRNLEF 116


>At1g06070.1 68414.m00636 bZIP transcription factor, putative
           (bZIP69) similar to transcriptional activator RF2a
           GB:AF005492 GI:2253277 from [Oryza sativa]; contains
           Pfam profile PF00170: bZIP transcription factor
          Length = 423

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 474 HQYRTLQQNLEVHEQYQQIHSLHQLLRI*QQ 382
           HQ +  QQ  + H Q QQ++ L Q  R+ QQ
Sbjct: 359 HQQQQQQQQQQFHFQQQQLYQLQQQQRLQQQ 389


>At4g03000.2 68417.m00408 expressed protein contains similarity to
           hypothetical proteins
          Length = 814

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = -2

Query: 298 APAPLACTTRSGIRSLSKDDISSRKLTSCNKAGPFLPTVCIAVLIPTGAPDLVVMK 131
           APAP+A   +SG     K  +S++       A P+  T  + + IP    D +++K
Sbjct: 417 APAPVASEKKSGSEPEEKPSVSTKPAPDYYAAIPYDAT--LGIYIPRNKRDELILK 470


>At4g03000.1 68417.m00407 expressed protein contains similarity to
           hypothetical proteins
          Length = 814

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = -2

Query: 298 APAPLACTTRSGIRSLSKDDISSRKLTSCNKAGPFLPTVCIAVLIPTGAPDLVVMK 131
           APAP+A   +SG     K  +S++       A P+  T  + + IP    D +++K
Sbjct: 417 APAPVASEKKSGSEPEEKPSVSTKPAPDYYAAIPYDAT--LGIYIPRNKRDELILK 470


>At2g46830.2 68415.m05844 myb-related transcription factor (CCA1)
           identical to myb-related transcription factor (CCA1)
           GI:4090569 from [Arabidopsis thaliana]
          Length = 526

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -2

Query: 262 IRSLSKDDISSRKLTSCNKAGPFLPTVCIAVLIPTGA 152
           +R  S  D++++ L + N+ GP    + I VL+P G+
Sbjct: 119 VRKESNSDLNAKSLENGNEQGPQTYPMHIPVLVPLGS 155


>At2g46830.1 68415.m05843 myb-related transcription factor (CCA1)
           identical to myb-related transcription factor (CCA1)
           GI:4090569 from [Arabidopsis thaliana]
          Length = 608

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -2

Query: 262 IRSLSKDDISSRKLTSCNKAGPFLPTVCIAVLIPTGA 152
           +R  S  D++++ L + N+ GP    + I VL+P G+
Sbjct: 201 VRKESNSDLNAKSLENGNEQGPQTYPMHIPVLVPLGS 237


>At2g31390.1 68415.m03836 pfkB-type carbohydrate kinase family
           protein contains Pfam profile: PF00294 pfkB family
           carbohydrate kinase
          Length = 325

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 111 TLKDSPGFITTKSGAPVGIKTAIQTVG 191
           +L ++PGF+    GAP  +  A+  +G
Sbjct: 28  SLAEAPGFLKAPGGAPANVAIAVSRLG 54


>At1g12430.1 68414.m01436 armadillo/beta-catenin repeat family
           protein / kinesin motor family protein
          Length = 919

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
 Frame = +3

Query: 147 SGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRERIPERVVHAKGAGAFGYFEVTHD 326
           +G P  ++ A++   +NG  L+ D +F D     + +   +R+   K       FE    
Sbjct: 65  AGVPGRVRVAVRLRPRNGEELIADADFAD---CVELQPELKRLKLRKNNWDTDTFEFDEV 121

Query: 327 ITKYSAAK-VFESIGK 371
           +T+Y++ K V+E + K
Sbjct: 122 LTEYASQKRVYEVVAK 137


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,706,226
Number of Sequences: 28952
Number of extensions: 262667
Number of successful extensions: 756
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)