Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0677
(531 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0258 - 13573730-13573816,13573881-13574666,13575043-135751... 29 1.8
05_07_0185 - 28257291-28257616,28258202-28258469,28258580-28260061 29 3.1
01_04_0015 - 15103044-15103191,15103253-15103313,15104580-151046... 29 3.1
10_08_0324 + 16747117-16747330,16747432-16747559,16747675-167477... 24 3.5
09_06_0148 - 21214460-21214561,21214993-21215339,21215428-212155... 28 4.1
01_05_0635 - 23847255-23847287,23847397-23848083,23848178-238485... 28 4.1
06_03_0335 + 19662933-19663334,19663358-19664023 28 5.4
05_07_0184 - 28253448-28253743,28253835-28254102,28254439-28255869 27 7.1
12_01_0368 + 2815424-2815658,2816898-2817120,2818329-2818680,281... 27 9.4
11_01_0345 + 2579602-2579836,2581262-2581484,2582822-2583173,258... 27 9.4
03_02_0461 - 8658494-8658876,8659791-8659859,8661746-8662187 27 9.4
>04_03_0258 -
13573730-13573816,13573881-13574666,13575043-13575126,
13575254-13575322,13575324-13576228,13576517-13576784
Length = 732
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +1
Query: 76 EIVLFPVVLIMALFGHCGLMSPFVYYYFVTWRYASRRNPYTRNTF 210
E L+ VL L+G+ G P +YY ++ SR++P TR TF
Sbjct: 280 ESKLYMTVLPDGLYGYVGSKPPQLYYTYLVDTNKSRKDP-TRVTF 323
>05_07_0185 - 28257291-28257616,28258202-28258469,28258580-28260061
Length = 691
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 424 SELCTDAVRCTTRCIISYYDLIFFRTQITVVVARR 320
+ L + V CT I+SY LI+FR + + RR
Sbjct: 508 NNLVSGPVYCTDDDIVSYTPLIYFRCHVNFLARRR 542
>01_04_0015 -
15103044-15103191,15103253-15103313,15104580-15104643,
15104820-15104962,15105031-15105127
Length = 170
Score = 28.7 bits (61), Expect = 3.1
Identities = 19/61 (31%), Positives = 22/61 (36%)
Frame = +1
Query: 157 FVTWRYASRRNPYTRNTFRELRVAADGLTQRPWVPAALASALRSAIDIVCRMAPPVEQQQ 336
FV W + R T AA G Q AL AL I I C + V +Q
Sbjct: 91 FVEWMFIYRDEGILSRTIPLSESAARGTLQMETSDEALLKALEQGILIACNSSAKVPDEQ 150
Query: 337 Q 339
Q
Sbjct: 151 Q 151
>10_08_0324 +
16747117-16747330,16747432-16747559,16747675-16747744,
16747832-16747988,16748089-16748701,16749132-16749653,
16749686-16750279,16750359-16750709,16750808-16751395
Length = 1078
Score = 23.8 bits (49), Expect(2) = 3.5
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = -2
Query: 338 CCCCSTGGAMR 306
CCCC GG R
Sbjct: 618 CCCCCFGGGKR 628
Score = 23.0 bits (47), Expect(2) = 3.5
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = -2
Query: 362 DIFPYADYCCCCSTGG 315
D +P CCCC GG
Sbjct: 611 DCWPSWCCCCCCFGGG 626
>09_06_0148 -
21214460-21214561,21214993-21215339,21215428-21215538,
21215673-21215835,21215921-21215999,21216110-21216228
Length = 306
Score = 28.3 bits (60), Expect = 4.1
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = +3
Query: 84 AVPGRTHHGIVRSLRLDESVRILLLRDVEVRVAPEPVHPQHVPRAP---RGRRR 236
++ G+ HG + ++++ LR V RVAP P P P P RGRRR
Sbjct: 167 SIDGKFEHGYLVTVKIAAET----LRGVLYRVAPPPPPPAAPPPPPPPARGRRR 216
>01_05_0635 -
23847255-23847287,23847397-23848083,23848178-23848540,
23848633-23848725,23848820-23848870,23849031-23849304,
23849766-23850595
Length = 776
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/42 (30%), Positives = 16/42 (38%)
Frame = +3
Query: 3 SARGSAHLPCRVPVAEHPPGRGARRDRAVPGRTHHGIVRSLR 128
SA G P PGRG R + HHG+ +R
Sbjct: 8 SAAGGQPWSSAAPAPASAPGRGGARREILTNHHHHGLKEKMR 49
>06_03_0335 + 19662933-19663334,19663358-19664023
Length = 355
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +3
Query: 150 LLLRDVEVRVAPEPVHPQHVPRAPRGRRR 236
LL R + +A P+H VPRAP RRR
Sbjct: 136 LLPRRLHRPLAARPLHVPGVPRAPGARRR 164
>05_07_0184 - 28253448-28253743,28253835-28254102,28254439-28255869
Length = 664
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 403 VRCTTRCIISYYDLIFFRTQITVVVARR 320
V CT I+SY LI+FR + + RR
Sbjct: 498 VYCTDDDIVSYTPLIYFRCHVNFLARRR 525
>12_01_0368 +
2815424-2815658,2816898-2817120,2818329-2818680,
2819354-2819620
Length = 358
Score = 27.1 bits (57), Expect = 9.4
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +1
Query: 94 VVLIMALFGHCGLMSPFVYYYF-VTWRYASRRNPYTRNTFRELRVAADG 237
VV+ A+ G C L+S F Y F V A Y R TF EL G
Sbjct: 39 VVVSYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGELAAFLTG 87
>11_01_0345 +
2579602-2579836,2581262-2581484,2582822-2583173,
2583894-2584125,2584683-2585266
Length = 541
Score = 27.1 bits (57), Expect = 9.4
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +1
Query: 94 VVLIMALFGHCGLMSPFVYYYF-VTWRYASRRNPYTRNTFRELRVAADG 237
VV+ A+ G C L+S F Y F V A Y R TF EL G
Sbjct: 39 VVVSYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGELAAFLTG 87
>03_02_0461 - 8658494-8658876,8659791-8659859,8661746-8662187
Length = 297
Score = 27.1 bits (57), Expect = 9.4
Identities = 16/25 (64%), Positives = 16/25 (64%)
Frame = -3
Query: 88 TARSRRAPRPGGCSATGTRHGR*AD 14
TA SRR PR GGC G R GR AD
Sbjct: 42 TAASRRRPRGGGC-GRGAR-GRAAD 64
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,908,783
Number of Sequences: 37544
Number of extensions: 218353
Number of successful extensions: 822
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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