Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0677
         (531 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9040| Best HMM Match : UPF0121 (HMM E-Value=2.7)                    31   0.58 
SB_26236| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.0  
SB_39597| Best HMM Match : 7tm_2 (HMM E-Value=2.9e-13)                 29   3.1  
SB_37159| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_50629| Best HMM Match : Extensin_2 (HMM E-Value=0.94)               27   7.2  
SB_49205| Best HMM Match : DUF134 (HMM E-Value=0.96)                   27   7.2  
SB_3122| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.2  
SB_48209| Best HMM Match : DNA_pol_B_2 (HMM E-Value=5.1e-05)           27   9.5  
SB_50960| Best HMM Match : Pkinase (HMM E-Value=0)                     27   9.5  
SB_38760| Best HMM Match : Ras (HMM E-Value=4.6e-06)                   27   9.5  

>SB_9040| Best HMM Match : UPF0121 (HMM E-Value=2.7)
          Length = 89

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +1

Query: 199 RNTFRELRVAADGLTQRPWVPAALASALRSAIDIVCRMAPPVE 327
           R  F ELR    GL      P  + S + SAI+ + R+AP +E
Sbjct: 38  RLLFAELRQGIQGLAYHQRCPVFVRSFVLSAINFISRLAPTIE 80


>SB_26236| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 736

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +1

Query: 133 MSPFVYYYFVTWRYASRRNPYTRNTFRELRVAADGLTQRPWVPAALA 273
           MS  +++ +  WR  + R P      R L + A GL    W+  + A
Sbjct: 125 MSVTLWHVWDVWRSLTHRGPGLNQAIRGLSICATGLANESWLDVSCA 171


>SB_39597| Best HMM Match : 7tm_2 (HMM E-Value=2.9e-13)
          Length = 1052

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
 Frame = +1

Query: 103  IMALFGHCGLMSPFVYYYFV---TWRYASRRNPYTRNTF-RELRVAADGLTQRPWVPAAL 270
            ++A+  H   ++ F++   +   TWR  S R+  +  T  RE  +         W+PA L
Sbjct: 819  VVAILLHYFFLASFIWTAIIAWDTWRAFSHRSHRSAKTMKRENLIGTLRCMAVGWLPALL 878

Query: 271  ASALRSAIDI 300
              A+ +AID+
Sbjct: 879  FVAITTAIDL 888


>SB_37159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 450

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -1

Query: 117 EQCHDEYDREQHDLGERRGPEDVPRLELDTGDEQTL 10
           EQ H+EY    H + +   PEDVP +      E  L
Sbjct: 39  EQQHEEYSVPAHSMAQVPQPEDVPVIAAQAMPEAVL 74


>SB_50629| Best HMM Match : Extensin_2 (HMM E-Value=0.94)
          Length = 450

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 22/72 (30%), Positives = 28/72 (38%)
 Frame = +3

Query: 9   RGSAHLPCRVPVAEHPPGRGARRDRAVPGRTHHGIVRSLRLDESVRILLLRDVEVRVAPE 188
           RG +H P RVPV+        RR    P R      R + +    R    R V V     
Sbjct: 264 RGRSHSPRRVPVSPRQRSNSPRRVPVSP-RQRSNSPRRVPVSPRQRSNSPRRVPVSPRQR 322

Query: 189 PVHPQHVPRAPR 224
           P  P+ VP + R
Sbjct: 323 PNLPRRVPLSSR 334


>SB_49205| Best HMM Match : DUF134 (HMM E-Value=0.96)
          Length = 165

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = -1

Query: 138 THQAAVTEQCHDEYDREQHDLGERRGPEDVPRLELDTGDEQTLV 7
           TH + ++ Q        + D+    G +++ R EL+ G+E+T+V
Sbjct: 72  THHSCLSSQIRKAIINGRRDILNESGVKNLIRFELEEGNERTVV 115


>SB_3122| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1246

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 102 HHGIVRSLRLDESVRILLLRDVEVRVAP-EPVHPQHVPRAP 221
           H GI   +   E   ++   D E +  P EP++PQ+ P +P
Sbjct: 779 HQGISTDMSHAEVQAVVECSDAETQTLPNEPMNPQNTPSSP 819


>SB_48209| Best HMM Match : DNA_pol_B_2 (HMM E-Value=5.1e-05)
          Length = 974

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 145 VYYYFVTWRYASRRNPYTRNTFRELR 222
           VY Y   + +AS R P T  T +ELR
Sbjct: 560 VYQYHGCFYHASHRQPLTNTTMQELR 585


>SB_50960| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 632

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +1

Query: 148 YYY--FVTWRYASRRNPYTRNTFRELRVAADG 237
           YY+  ++ W++  R+ P T+ TFR  RV   G
Sbjct: 64  YYFLRYLQWKWLERQ-PVTKKTFRHYRVLGKG 94


>SB_38760| Best HMM Match : Ras (HMM E-Value=4.6e-06)
          Length = 965

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -2

Query: 260 GTQGRCVSPSAA--TRSSRNVLRVYGFRRDAYLHVT 159
           G  G C+SPS+A   ++  NV    G   D Y+ +T
Sbjct: 462 GINGHCISPSSAINIKALHNVTNTKGRCNDGYMDLT 497


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,567,735
Number of Sequences: 59808
Number of extensions: 256008
Number of successful extensions: 827
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1191330434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)