Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0677
         (531 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032626-27|CAA21541.1|  271|Caenorhabditis elegans Hypothetical...    74   6e-14
AC006834-8|AAF40006.1|  865|Caenorhabditis elegans Hypothetical ...    29   1.6  

>AL032626-27|CAA21541.1|  271|Caenorhabditis elegans Hypothetical
           protein Y37D8A.17 protein.
          Length = 271

 Score = 74.1 bits (174), Expect = 6e-14
 Identities = 36/95 (37%), Positives = 54/95 (56%)
 Frame = +1

Query: 40  QSRNILRAAALAEIVLFPVVLIMALFGHCGLMSPFVYYYFVTWRYASRRNPYTRNTFREL 219
           Q++N L   A +EI L P+++ +   G   L+ PF YY F++ RYASRRNP TR  F ++
Sbjct: 176 QTQNALGIIACSEIFLVPLLVSLIFSGKGSLLLPFAYYRFLSLRYASRRNPSTRQAFAQM 235

Query: 220 RVAADGLTQRPWVPAALASALRSAIDIVCRMAPPV 324
           R +   +      P  ++S +  AID +   APPV
Sbjct: 236 RGSLQNVAMSSSCPRPISSLIYRAIDFISARAPPV 270


>AC006834-8|AAF40006.1|  865|Caenorhabditis elegans Hypothetical
           protein ZK973.2 protein.
          Length = 865

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -3

Query: 79  SRRAPRPGGCSATGTRHGR*A-DPRA 5
           S ++PRPGG S +  RHG  A DPR+
Sbjct: 832 SSKSPRPGGPSTSSHRHGSHANDPRS 857


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,804,589
Number of Sequences: 27780
Number of extensions: 177155
Number of successful extensions: 571
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)