Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0677
         (531 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g25230.1 68418.m02991 elongation factor Tu family protein tra...    30   1.1  
At1g48780.1 68414.m05459 hypothetical protein                          30   1.1  
At1g06220.2 68414.m00656 elongation factor Tu family protein sim...    30   1.1  
At1g06220.1 68414.m00655 elongation factor Tu family protein sim...    30   1.1  
At4g30020.1 68417.m04272 subtilase family protein contains simil...    27   6.0  
At3g61420.1 68416.m06879 transcription factor-related low simila...    27   6.0  
At1g22670.1 68414.m02833 protease-associated zinc finger (C3HC4-...    27   6.0  

>At5g25230.1 68418.m02991 elongation factor Tu family protein
           translation Elongation Factor 2, Schizosaccharomyces
           pombe, PIR:T39902
          Length = 973

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 132 DESVRILLLRDVEVRVAPEPVHPQHVPRAPRGRR 233
           DE +R +  + V+ R+APEP+H       P  RR
Sbjct: 781 DEPIRNVKFKIVDARIAPEPLHRGSGQMIPTARR 814


>At1g48780.1 68414.m05459 hypothetical protein
          Length = 251

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -2

Query: 98  TTGNSTISASAAARRMFRDWNSTREMSRPSC 6
           T  NST S + + R M RD N+ R  SR SC
Sbjct: 163 TRSNSTGSVTNSKRAMLRDVNNHRPSSRSSC 193


>At1g06220.2 68414.m00656 elongation factor Tu family protein
           similar to Cryptosporidium parvum elongation factor-2
           GB:U21667 GI:706974 from [Cryptosporidium parvum]
          Length = 987

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 132 DESVRILLLRDVEVRVAPEPVHPQHVPRAPRGRR 233
           DE +R +  + V+ R+APEP+H       P  RR
Sbjct: 795 DEPIRNVKFKIVDARIAPEPLHRGSGQMIPTARR 828


>At1g06220.1 68414.m00655 elongation factor Tu family protein
           similar to Cryptosporidium parvum elongation factor-2
           GB:U21667 GI:706974 from [Cryptosporidium parvum]
          Length = 987

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 132 DESVRILLLRDVEVRVAPEPVHPQHVPRAPRGRR 233
           DE +R +  + V+ R+APEP+H       P  RR
Sbjct: 795 DEPIRNVKFKIVDARIAPEPLHRGSGQMIPTARR 828


>At4g30020.1 68417.m04272 subtilase family protein contains
           similarity to meiotic serine proteinase TMP GI:6468325
           from [Lycopersicon esculentum]
          Length = 816

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 253 WVPAALASALRSAIDIVCRMAPPVEQQQ 336
           W PAA+ SAL +   ++ R   P++ QQ
Sbjct: 617 WSPAAIKSALMTTSTVIDRAGRPLQAQQ 644


>At3g61420.1 68416.m06879 transcription factor-related low
           similarity to SP|Q9DBA9 TFIIH basal transcription factor
           complex p62 subunit {Mus musculus}; contains Pfam
           profile PF03909: BSD domain
          Length = 566

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -2

Query: 254 QGRCVS-PSAATRSSRNVLRVYGFRRDAYLHVTK**YTNGLIKPQ 123
           QG  +S P  A  S RNV   YG  +++ L +     ++ LIKP+
Sbjct: 383 QGNILSEPRGAKASKRNVHEAYGLLKESILVIRMTGLSDPLIKPE 427


>At1g22670.1 68414.m02833 protease-associated zinc finger
           (C3HC4-type RING finger) family protein contains Pfam
           domain, PF02225: protease-associated (PA) domain and
           Pfam domain, PF00097: Zinc finger, C3HC4 type (RING
           finger); similar to ReMembR-H2 protein JR702
           [Arabidopsis thaliana] gi|6942149|gb|AAF32326
          Length = 422

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 10/44 (22%), Positives = 23/44 (52%)
 Frame = +2

Query: 350 TEKYQVIITNDTTSSAPYCISAQFGWILTLRFHCLLTLCIYVSR 481
           +E+ +V++    T  + + + A    IL+L   C++  C++  R
Sbjct: 148 SEEMEVMLVPPNTEDSVWSLYASIALILSLAIFCVMVTCVFFYR 191


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,034,267
Number of Sequences: 28952
Number of extensions: 157185
Number of successful extensions: 459
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 987020800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)