Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0676
         (615 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces p...    29   0.71 
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.2  
SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr 3...    26   3.8  
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   8.7  
SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr...    25   8.7  
SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   8.7  

>SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 28.7 bits (61), Expect = 0.71
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 532 IPKECNIDLPWYQGKVFYEVFPASFKDS 615
           +P E  I   W++    Y+++PASFKDS
Sbjct: 4   VPSE-KIKPNWWRETSVYQIYPASFKDS 30


>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +1

Query: 289 PVSAQLINNISMLDYQTLSKNGDLIIGQAEDVKLNGNLKINNRKLPSF 432
           P   Q+   I+ ++YQ LS   +L++     V L+   ++N   LP F
Sbjct: 507 PREIQMFGLINDINYQILSNMNNLVLLATIPVSLSSVFEVNYYYLPKF 554


>SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 466

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +1

Query: 343 SKNGDLIIGQAEDVKLNGNLKINNRKL-PSFVNWNWVVIRKILLWV 477
           +KNG L IG     KLN + K     +  S V W+ ++ +  LLW+
Sbjct: 251 TKNGSLKIGYMTGAKLNHDHKTQFFYVDQSLVFWSCMMDQMFLLWL 296


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = -1

Query: 555 VNITFFRNSYYHTNDSCKTSNEPRQYYPQ*NLSYNNPVPVH 433
           VN ++  NSY H      TS      YP   LS N+    H
Sbjct: 488 VNGSYSHNSYSHIPPVMSTSPPNHSVYPYSQLSINSVTANH 528


>SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +1

Query: 472 WVVLSGLIACLAAIIGMIITIP 537
           WVV++G++ C+     +I+  P
Sbjct: 254 WVVINGIVTCIDGFATLIVNNP 275


>SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 488

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +1

Query: 163 EELIEQPFLTLNGDNIDI 216
           EELI+   L +NGDN DI
Sbjct: 204 EELIKDDKLVINGDNKDI 221


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,320,648
Number of Sequences: 5004
Number of extensions: 42349
Number of successful extensions: 102
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)