Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0676
         (615 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0150 - 20215070-20217577                                         29   3.9  
04_04_0447 - 25297351-25297575,25297663-25298370,25298824-252991...    27   8.9  
01_06_1519 + 37942389-37943702,37944142-37944266,37944358-379444...    27   8.9  

>02_04_0150 - 20215070-20217577
          Length = 835

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -2

Query: 518 PMIAARQAMSPDSTTHSKIFRITTQFQFTKLGSFLLLI 405
           PM+ A  A+SPD  T  K F +TT    T LG+ L  +
Sbjct: 34  PMLVATFAVSPDLRTTEK-FMVTTTVLMTFLGAALFAV 70


>04_04_0447 -
           25297351-25297575,25297663-25298370,25298824-25299123,
           25299876-25299927,25300530-25300673,25301002-25301258,
           25301533-25301739,25301819-25301992,25302409-25302432,
           25302610-25302677,25304607-25304665,25304802-25304877,
           25304965-25305070,25305268-25305377,25305831-25305995,
           25306571-25306656,25306893-25306957,25307280-25307330,
           25309009-25309056,25309677-25309796,25310226-25310301,
           25310780-25310877,25312149-25312404,25313117-25313238
          Length = 1198

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +3

Query: 462 DFTVGSTVWAHCLSCSYHWYDNN 530
           +F  G  +W  C   S+ W+D N
Sbjct: 369 EFGEGGLLWGECSGKSFEWFDGN 391


>01_06_1519 +
           37942389-37943702,37944142-37944266,37944358-37944499,
           37944602-37944848,37946139-37946196,37947629-37947913,
           37947988-37948120
          Length = 767

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +1

Query: 412 NRKLPSFVNWNWVVIRKILLWVVLSGLIACLAAIIGMIITIPKECNIDLPWYQ 570
           NR   S V W   + R   +W +L    A  A+++    T+P  CN+   + Q
Sbjct: 712 NRGWDSSVTWRCRIRR---VWFMLRAAAAAAASVLRQFNTMPDLCNVQRAYEQ 761


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,168,197
Number of Sequences: 37544
Number of extensions: 243841
Number of successful extensions: 518
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)