Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0676
         (615 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35703| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.034
SB_43689| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_53143| Best HMM Match : PKD (HMM E-Value=2.7e-18)                   28   6.9  

>SB_35703| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 873

 Score = 35.5 bits (78), Expect = 0.034
 Identities = 22/63 (34%), Positives = 34/63 (53%)
 Frame = +1

Query: 340 LSKNGDLIIGQAEDVKLNGNLKINNRKLPSFVNWNWVVIRKILLWVVLSGLIACLAAIIG 519
           L +NG LI+ +  DV++ G + I      + V   WVV  +++L  VL  +I+ L  IIG
Sbjct: 133 LKENGALIVDEVNDVRIIGLITIVFILAVALVGLKWVVRTQVILLAVL--IISILDVIIG 190

Query: 520 MII 528
             I
Sbjct: 191 TFI 193


>SB_43689| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 416

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +1

Query: 418 KLPSFVNWNWVVIRKILLWVVLSGLIACLAAIIGMIITI 534
           KL   + W WVV+  + +W+VLS  + CL  +  +I +I
Sbjct: 217 KLDDVIKWRWVVV-FVPMWIVLS--LLCLLVLYYVIWSI 252


>SB_53143| Best HMM Match : PKD (HMM E-Value=2.7e-18)
          Length = 2111

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = +1

Query: 316  ISMLDYQTLSKNGDLIIGQAEDVKLNGNLKINNRKLPSFVNWNWVVIRKI 465
            +  LD +T   NG ++  Q ED     N + N  KL +F+ WN  ++RKI
Sbjct: 1356 LDKLDNET-QVNGMMVTLQMEDSFEVANSRKN--KLLAFITWNTDILRKI 1402


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,513,011
Number of Sequences: 59808
Number of extensions: 294367
Number of successful extensions: 559
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)