Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0676
         (615 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117204-39|CAB55145.4|  422|Caenorhabditis elegans Hypothetical...    29   2.0  
Z79755-9|CAC42297.1|  143|Caenorhabditis elegans Hypothetical pr...    28   6.1  

>AL117204-39|CAB55145.4|  422|Caenorhabditis elegans Hypothetical
           protein Y116A8C.9 protein.
          Length = 422

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +1

Query: 418 KLPSFVNWNWVVIRKILLWVVLSGLIACLAAIIGMIITI 534
           KL   V+W W V+  I LWVVLS  +A +  +  +++++
Sbjct: 169 KLDKQVDWTWAVV-FIPLWVVLS--LAAVGVLYALVLSV 204


>Z79755-9|CAC42297.1|  143|Caenorhabditis elegans Hypothetical
           protein F43G9.13 protein.
          Length = 143

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +1

Query: 430 FVNWNWVVIRKILLWVVLSGLIACLAAIIGMIITI---PKECNIDLPW 564
           ++N  W +   I LW+ LS ++  L A I  + T+   P  C I +P+
Sbjct: 38  YMNDWWEITLSIFLWMSLSFMVISLGATILSLFTLRKHPYVCFIPIPF 85


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,559,251
Number of Sequences: 27780
Number of extensions: 230398
Number of successful extensions: 513
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)