Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0674
         (427 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    29   0.23 
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    26   2.8  
SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyce...    25   3.7  
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ...    25   4.9  
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe...    25   4.9  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    25   4.9  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   4.9  
SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr...    25   6.5  
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po...    25   6.5  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    24   8.6  
SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom...    24   8.6  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    24   8.6  
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   8.6  

>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 29.5 bits (63), Expect = 0.23
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -3

Query: 203 PAEALLRNKLYSVTEGCCQEHSPTH-KPSDRLLLSPFHFPYVKYLIVPGFSLILT 42
           P + +L     S+ E  C ++S T  +PS R  LS  + PY K  + P   +++T
Sbjct: 46  PPKFVLDAAKKSIDEVACNQYSHTRGRPSLRKALSEAYSPYFKRTLNPDTEIVVT 100


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +2

Query: 56  KIQVQLDTLHMGNEMVIIKGGQRVCGSGCALGNTPLLQNKAYFEV--KLQQGGVW 214
           K+Q +  +  + N+  II     V     A  N+P L++KA FE   +L   G W
Sbjct: 518 KLQEKAASFDIPNKSTIISTKSTVASPIKANENSPALKSKASFEFPKELDPDGTW 572


>SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 851

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = +2

Query: 146 LGNTPLLQNK--AYFEVKLQQGGVW 214
           +G  P ++NK  AY  ++L + GVW
Sbjct: 289 VGGVPSIRNKIRAYLNIRLLRNGVW 313


>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 621

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 336 KWYNSTLSLLTVPSLFKHHESLS 268
           KW+N+ LS   +PS+F   + LS
Sbjct: 16  KWFNTKLSSRDLPSVFDLRKDLS 38


>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +2

Query: 56  KIQVQLDTLHMGNEMVIIKGGQRVCGSGCALGNTPLLQNKAYFEVKLQQGGVW 214
           K QV    L  G  ++++  G R+   GCA G+   + + ++    L Q  +W
Sbjct: 323 KPQVDRYELKNGRHIILLADG-RLVNLGCATGHPSFVMSCSFTNQVLAQIALW 374


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 13/53 (24%), Positives = 25/53 (47%)
 Frame = +2

Query: 218 VGLVTRETDPNRVHGGMDKDSWCLNSDGTVRSDNVELYHLAPAPRESPTDELL 376
           +G V  ET+ NR++ G+  ++     +G    + ++  H A + R   T   L
Sbjct: 1   MGTVVGETELNRLNNGLSSNNGSSADEGLEHWNPLKKIHSADSSRRRSTSSQL 53


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 330 YNSTLSLLTVPSLFKHHESLSMPP*TLLGSVSLVTRPTAH 211
           +NST +  TVP     + + ++PP T L + +    PT H
Sbjct: 77  HNSTTT--TVPPTTSMNTTTTVPPTTSLNTTTTTAPPTTH 114


>SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 473

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = -3

Query: 209 HLPAEALLR--NKLYSVTEGCCQEHSPTHKP 123
           HLP + + +  ++LY +  G   EH  T  P
Sbjct: 376 HLPKDPMFQLVSRLYEIVPGVLTEHGKTKNP 406


>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 594

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 65  VQLDTLHMGNEMVIIKGGQRVC 130
           V +D  H+ NEM+  KGG   C
Sbjct: 356 VSVDICHIFNEMIFGKGGHLHC 377


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 19/46 (41%), Positives = 22/46 (47%)
 Frame = -1

Query: 313 ASHCTVAV*APRIFVHAAMNSIRICFPSNKAHSPYTSLLKLYFEIS 176
           AS   +AV     FVHAA NS  +   S   H   +SLL    EIS
Sbjct: 720 ASSNRMAVPDKSPFVHAAPNSKALTKDSFSTHISVSSLLHSDNEIS 765


>SPAC1486.09 |||ribosome biogenesis protein Nob1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +2

Query: 128 CGSGCALGNTPLLQNKAYFEVKLQQGGVWAVGLVTRETDPNRVHG 262
           CG    +  T  + +K  F+V L++   W     T+ + P  VHG
Sbjct: 274 CGGNTLIKTTCSINSKGEFQVHLKKNFEWKT-RGTKYSLPKPVHG 317


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 119  QRVCGSGCALGNTPLLQNKAYFEVKLQQGGVWAVGL 226
            QRVC      GN   L + A   +++ Q G  AVG+
Sbjct: 1329 QRVCTKYVQFGNVFNLLHAAVSYIRIHQKGFGAVGV 1364


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -3

Query: 113 LLLSPFHFPYVKYLIVPGFSLILTGTLGVSVNPF 12
           L  S   FP + +++ P FSL L+       +PF
Sbjct: 182 LFFSFLSFPLLSFILFPCFSLFLSSNSFSLASPF 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,874,214
Number of Sequences: 5004
Number of extensions: 39238
Number of successful extensions: 129
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)