Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0674
         (427 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1380 + 29747187-29747267,29747349-29747481,29747758-297477...    29   2.1  
06_01_0170 - 1352865-1353422,1355049-1355327                           28   3.6  
04_04_0392 + 24891478-24891612,24891875-24893092                       27   4.8  
07_01_0070 + 515247-515397,516198-516265,516360-518456,518750-51...    27   6.3  
07_03_1607 + 28119886-28120239,28121097-28121153,28121377-281214...    27   8.3  

>06_03_1380 +
           29747187-29747267,29747349-29747481,29747758-29747770,
           29748027-29748118,29749011-29749831,29750375-29750677
          Length = 480

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 143 HSPTHKPSDRLLLSPFHFPYVKYLIVPG 60
           HS + + + + +L PFHF Y KY++  G
Sbjct: 66  HSVSTQDAIQSILYPFHFGYSKYILTQG 93


>06_01_0170 - 1352865-1353422,1355049-1355327
          Length = 278

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 19/56 (33%), Positives = 23/56 (41%)
 Frame = +2

Query: 203 GGVWAVGLVTRETDPNRVHGGMDKDSWCLNSDGTVRSDNVELYHLAPAPRESPTDE 370
           GG W V L   E DP    GG        +  G  R   V+  H AP+   +P DE
Sbjct: 5   GGAWRVNLGVEEEDPGEAGGGGAAPD--EDGGGEQRPLAVDHLHFAPS-LPAPVDE 57


>04_04_0392 + 24891478-24891612,24891875-24893092
          Length = 450

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = -2

Query: 336 KWYNSTLSLLTVPSLFKHHESLSMPP*TLLGSVSLVTRPTAHTPPC*SFTSK*AL 172
           K   +T  LLT+P + +  E LSMP   +  S  +   P+A   P  SF+ + A+
Sbjct: 142 KTCGTTKLLLTIPRILELAEGLSMPLAAVKYSRGMFIFPSAQPAPHRSFSEEVAV 196


>07_01_0070 +
           515247-515397,516198-516265,516360-518456,518750-518900,
           519883-520638,520990-521164,521303-521387
          Length = 1160

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 18/70 (25%), Positives = 30/70 (42%)
 Frame = +2

Query: 215 AVGLVTRETDPNRVHGGMDKDSWCLNSDGTVRSDNVELYHLAPAPRESPTDELLVSTESP 394
           A  +  R +  + +    D++ +  ++  T  S NV+  H      ES       STE P
Sbjct: 788 AATITERPSPVSVLDSSFDQEEF-FHTSKTTNSSNVDDEHHPSPSEESCKPSEKKSTELP 846

Query: 395 THTENEKIEN 424
           T  +N K+ N
Sbjct: 847 TQPKNSKLAN 856


>07_03_1607 +
           28119886-28120239,28121097-28121153,28121377-28121464,
           28121557-28121686,28121783-28121962,28122291-28122759
          Length = 425

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 281 WCLNSDGTVRSDNVELYHLAPAPRESPTDE 370
           WCLN  G V   +V+ + L  +   +PT++
Sbjct: 351 WCLNFHGRVTVASVKNFQLVASDESNPTNQ 380


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,403,988
Number of Sequences: 37544
Number of extensions: 277705
Number of successful extensions: 631
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)