Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0674
(427 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13146| Best HMM Match : Laminin_G_2 (HMM E-Value=1.5e-25) 29 1.6
SB_13109| Best HMM Match : Dynein_heavy (HMM E-Value=2.6e-09) 29 2.1
SB_35682| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.8
SB_48350| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.8
SB_48800| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.9
SB_29554| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.9
SB_7173| Best HMM Match : dDENN (HMM E-Value=1.5e-08) 27 4.9
SB_28043| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.9
SB_22729| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.9
SB_8478| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_7352| Best HMM Match : RmlD_sub_bind (HMM E-Value=1) 27 8.6
>SB_13146| Best HMM Match : Laminin_G_2 (HMM E-Value=1.5e-25)
Length = 614
Score = 29.1 bits (62), Expect = 1.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 320 RCRFSLYRRCLSTTNLCPCRHELY 249
+C S Y +C + +N+CP RH Y
Sbjct: 225 KCDTSCYAKCNTESNVCPSRHIKY 248
>SB_13109| Best HMM Match : Dynein_heavy (HMM E-Value=2.6e-09)
Length = 1703
Score = 28.7 bits (61), Expect = 2.1
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = -3
Query: 182 NKLYSVTEGCCQEHSPTHKPSDRLLLSPFHFPYV----KYLIVPGFSLILTGTLG 30
++LY + E C E++ THK L++ + ++ + L PG + +L G G
Sbjct: 454 DELYKIVEACLDEYNQTHKTGMNLVVFRYVLEHLVRISRVLKQPGGNALLVGVGG 508
>SB_35682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 181
Score = 28.3 bits (60), Expect = 2.8
Identities = 20/76 (26%), Positives = 31/76 (40%)
Frame = +2
Query: 143 ALGNTPLLQNKAYFEVKLQQGGVWAVGLVTRETDPNRVHGGMDKDSWCLNSDGTVRSDNV 322
A+ + ++N Y ++ A G + P+ GG + D L+ G S N
Sbjct: 26 AMDGSESMRNGGYDYTQVDGENEIAEGFLAIIQAPHNEMGG-EPDHLSLDQGGETSSQNS 84
Query: 323 ELYHLAPAPRESPTDE 370
Y + APR TDE
Sbjct: 85 AYYENSQAPRNDLTDE 100
>SB_48350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 883
Score = 28.3 bits (60), Expect = 2.8
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 32 LAYRLESKKIQVQLDTLHMGNEMVIIKGGQRVCGSGCALGNT 157
LAY K++ +Q D G V+++ G+ +C CAL T
Sbjct: 322 LAYYDPDKELVIQCDASSTGLGTVLLQEGKPLCYVSCALTTT 363
>SB_48800| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 115
Score = 27.5 bits (58), Expect = 4.9
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -3
Query: 143 HSPTHKPSDRLLLSPFHFPYVKYLIVP 63
+SP P R+L SP +PY++ +++P
Sbjct: 87 NSPEQYPYIRVLNSPEQYPYIREMLLP 113
>SB_29554| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 27.5 bits (58), Expect = 4.9
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Frame = +2
Query: 131 GSGCALGNTPLLQNKAYFEVKLQ--QGGVWAVGLVTRE----TDPNRVHG--GMDKDSWC 286
G+ LGN + Y+E+KL +G +G+ T++ TD G D++SW
Sbjct: 108 GTAAVLGNKAFAHGQHYWEIKLTDVRGTSMMIGVATQDAMLHTDNYEYVNLVGRDQESWG 167
Query: 287 LNSDGTV 307
L+ G +
Sbjct: 168 LSHRGEI 174
>SB_7173| Best HMM Match : dDENN (HMM E-Value=1.5e-08)
Length = 416
Score = 27.5 bits (58), Expect = 4.9
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -3
Query: 221 PQPIHLPAEALLRNKLYSVTEGCCQEHSPTHKPSDRLLLSPF 96
P P+ + + R+ + SVT+G + S T L+L PF
Sbjct: 196 PGPLRKRSSSSSRSPVLSVTDGIAVQSSSTESVQPTLILPPF 237
>SB_28043| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 491
Score = 27.5 bits (58), Expect = 4.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 341 ELSGITQRCRFSLYRRCLSTTNLCPCRHE 255
++S ++CRFS RC + LC RH+
Sbjct: 83 KISQSGEKCRFSFKGRCDFDSGLCGLRHD 111
>SB_22729| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 426
Score = 27.5 bits (58), Expect = 4.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 323 QRCRFSLYRRCLSTTNLCPCRHE 255
++CRFS RC + LC RH+
Sbjct: 49 EKCRFSFKGRCNFDSGLCGLRHD 71
>SB_8478| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1033
Score = 27.1 bits (57), Expect = 6.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 323 QRCRFSLYRRCLSTTNLCPCRHE 255
++CRFS RC + LC RH+
Sbjct: 288 EKCRFSFKGRCDFDSGLCGLRHD 310
>SB_7352| Best HMM Match : RmlD_sub_bind (HMM E-Value=1)
Length = 305
Score = 26.6 bits (56), Expect = 8.6
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 67 TIRYFTYGK*NGDNKRRSEGLWVGLCS 147
T+R + Y + G N R +W G+CS
Sbjct: 275 TVRAYLYPRSVGKNSRSDWWIWFGICS 301
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,162,874
Number of Sequences: 59808
Number of extensions: 315849
Number of successful extensions: 712
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 814166562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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