Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0674
         (427 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g33820.1 68417.m04800 glycosyl hydrolase family 10 protein si...    27   4.0  
At5g15700.1 68418.m01836 DNA-directed RNA polymerase (RPOT2) ide...    27   7.0  
At3g15355.1 68416.m01945 ubiquitin-conjugating enzyme-related si...    27   7.0  
At4g33810.1 68417.m04798 glycosyl hydrolase family 10 protein si...    26   9.3  
At2g29610.1 68415.m03597 F-box family protein contains Pfam prof...    26   9.3  

>At4g33820.1 68417.m04800 glycosyl hydrolase family 10 protein
           similar to tapetum-specific endoxylanase [Zea mays]
           GI:7920155; contains Pfam profile PF00331: Glycosyl
           hydrolase family 10
          Length = 570

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = +2

Query: 188 VKLQQGGVWAVGLVTRETDPNRVHGG---MDKDSWCLNSDGTV 307
           VKL++G    VG+V R  +   VHGG    +++ W L   G V
Sbjct: 96  VKLREGNDKKVGVVFRTENGRLVHGGEVRANQECWTLLKGGIV 138


>At5g15700.1 68418.m01836 DNA-directed RNA polymerase (RPOT2)
           identical to phage-type RNA polymerase rpoT2
           [Arabidopsis thaliana] GI:11340683
          Length = 1011

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = -3

Query: 338 LSGITQRCRFSLYRRCLSTT 279
           LSGIT+R  FS   RCLS T
Sbjct: 97  LSGITRREEFSKSERCLSGT 116


>At3g15355.1 68416.m01945 ubiquitin-conjugating enzyme-related
           similar to ubiquitin-conjugating enzyme (GI:3319990)
           [Mus musculus]; similar to Baculoviral IAP
           repeat-containing protein 6 (Ubiquitin-conjugating
           BIR-domain enzyme apollon) (Swiss-Prot:Q9NR09) [Homo
           sapiens];
          Length = 609

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = -1

Query: 232 SNKAHSPYTSLLKLYFEISFIL*QRGVAKSTARPTNPLTAFYYHHFIS 89
           +  AH   TS  K Y E +FIL  + +  +  RP      F Y HF S
Sbjct: 467 AGSAHGESTS--KAYSENTFILSLKTMVYTMRRPPKYFEDFAYGHFFS 512


>At4g33810.1 68417.m04798 glycosyl hydrolase family 10 protein
           similar to tapetum specific protein GI:3885492 from [Zea
           mays]
          Length = 536

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
 Frame = +2

Query: 188 VKLQQGGVWAVGLVTRETDPNRVHGG---MDKDSWCLNSDGTV 307
           VKL++G    VG+V R  +   VHGG     K  W L   G V
Sbjct: 56  VKLREGNNKKVGVVFRTENGRFVHGGEVRAKKRCWTLLKGGIV 98


>At2g29610.1 68415.m03597 F-box family protein contains Pfam profile
           PF00646: F-box domain
          Length = 328

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 353 ESPTDELLVSTESPTHTENEKIENE 427
           E+P ++ + +   P H E EKI NE
Sbjct: 62  ENPQEQKIHNENLPVHQEEEKIHNE 86


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,844,845
Number of Sequences: 28952
Number of extensions: 214992
Number of successful extensions: 541
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 665183504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)