Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0670
         (551 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    27   1.4  
SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces pomb...    27   1.8  
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual            26   3.2  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    26   4.2  
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi...    26   4.2  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    25   5.6  
SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent me...    25   7.4  
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces...    25   9.8  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    25   9.8  
SPAC5H10.05c |||FAD binding oxidoreductasde |Schizosaccharomyces...    25   9.8  
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb...    25   9.8  

>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 366 CLLFQNCISFLNAKSSHIEC 307
           C+ F+NC+ F N K   +EC
Sbjct: 127 CMWFKNCVGFRNHKFFFLEC 146


>SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 401

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 254 LLDTSPYLLALTISVSILHSICELLAFKN 340
           L++TSP++  L +   +   IC L  FKN
Sbjct: 310 LIETSPHITFLDVREPVQFGICRLPLFKN 338


>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +3

Query: 105 KFLTYN*HINHLVCSSGNFIL 167
           +FLT+N   N++VC SG ++L
Sbjct: 12  QFLTWNSKHNYIVCCSGPYLL 32


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 13/61 (21%), Positives = 30/61 (49%)
 Frame = +2

Query: 260  DTSPYLLALTISVSILHSICELLAFKNDIQFWNNRQSLEGLSVRSVFFNVFQSTIVLLYV 439
            D  P+ L     ++ +    +++    DI  +NN+      S  ++FF +F + + ++Y+
Sbjct: 1146 DRFPHALLALFEIASIEGWVDIMRSVMDITGFNNQPQTNASSGNAMFFVLF-NLVSMIYI 1204

Query: 440  L 442
            L
Sbjct: 1205 L 1205


>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
           Gap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 766

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
 Frame = +2

Query: 80  YVPINKTTEVLNLQLTYQPLSLFKWQLYTAQAMRDKLSMFSALGAEEQDEDQDTVKELLL 259
           Y  IN      +LQL   PLS++++ + T Q      S    L   E+  +   VK  + 
Sbjct: 222 YQCINDVAIHPDLQLDIHPLSVYRYLVNTGQL---SPSEDDNLLTNEEVSEFPAVKNAIQ 278

Query: 260 DTSPYLLALT--ISVSILHSICEL 325
           + S  LL LT     ++L+SI E+
Sbjct: 279 ERSAQLLLLTKRFLDAVLNSIDEI 302


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 238 VLVFILFFSP*SRKHAKLVSHCLCSIKLP 152
           VL+FIL FSP +RK +K + +      +P
Sbjct: 629 VLLFILSFSPFNRKKSKTILNDTLPTSIP 657


>SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent
           methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 309

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
 Frame = +2

Query: 428 LLYVLDNETNVMVRISCFIGLLIEIWK----INKVMDVKINRESR 550
           L Y+L ++    ++I C  G+LI  W+    + +V+D K+NR  R
Sbjct: 71  LQYILKSQPFGNIKIDCQQGVLIPRWETEEWVERVVD-KLNRLER 114


>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 735

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = +2

Query: 26  NNINLLYF*MITGNMMRDYVPINKTTEVLNLQLTYQPLSLF-KWQLYTAQAMRDKLSMFS 202
           +++N +Y       M   YV   K    LNLQ+ Y P  +  +W     + + DK  + +
Sbjct: 202 SHVNRIYVPKAEQEMYEYYVRAAKERPYLNLQVEYLPEEITPEW----VRDVNDKPGLLA 257

Query: 203 ALGAEEQDEDQDT 241
               + QD++ +T
Sbjct: 258 LAMEKYQDDEGNT 270


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +2

Query: 260 DTSPYLLALTISVSILHSICELLAFKNDIQFWN 358
           +TSP +L+L   V I  ++  L+++ +D  F+N
Sbjct: 232 ETSPLVLSLVTEVIINTTLLPLVSYISDPDFFN 264


>SPAC5H10.05c |||FAD binding oxidoreductasde |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 196

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 489 NPMKHDILTITLVSLSRT*RSTIVDWKTLKNTE 391
           N   H++   TL+ L  T + T+VD    +NTE
Sbjct: 20  NKTLHNVAKDTLIQLGHTVQETVVDEGYDENTE 52


>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 967

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +2

Query: 392 SVFFNVFQSTIVLLYVLDNETNVMVRISCFIGLLIEIWKI 511
           + F N F  T   L   + ETNV++++   I  ++E++ +
Sbjct: 233 TAFLNYFTYTNPSLEGDEGETNVLIKVKASICEIVELYTL 272


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,285,978
Number of Sequences: 5004
Number of extensions: 47084
Number of successful extensions: 114
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)