Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0670
(551 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_1048 - 21998214-21998413,21998507-21998674,21998758-219989... 135 2e-32
09_02_0523 + 10196272-10196375,10196551-10197488,10200247-102008... 30 1.4
06_03_0732 + 23965090-23965431,23965610-23965746,23967359-239674... 30 1.4
11_06_0722 - 26678873-26680843 29 2.5
05_04_0288 + 19839597-19839821,19841882-19842107,19842494-198425... 29 3.3
10_08_0706 + 20034534-20034860,20034988-20035368 28 5.7
08_02_1567 - 27916010-27916118,27916256-27916391,27916675-279167... 28 5.7
04_03_0937 + 20923705-20923833,20924001-20924012,20924413-209244... 27 7.5
03_03_0134 + 14732622-14732830,14733202-14733316,14733429-147336... 27 7.5
04_04_0308 + 24286923-24286927,24288430-24288907,24288980-242890... 27 10.0
>04_03_1048 -
21998214-21998413,21998507-21998674,21998758-21998977,
21999571-21999761,21999869-21999962,22000257-22000500,
22001314-22001411,22001509-22001600,22001695-22001809,
22001890-22002036,22003031-22003255
Length = 597
Score = 135 bits (327), Expect = 2e-32
Identities = 69/162 (42%), Positives = 101/162 (62%), Gaps = 1/162 (0%)
Frame = +2
Query: 68 MMRD-YVPINKTTEVLNLQLTYQPLSLFKWQLYTAQAMRDKLSMFSALGAEEQDEDQDTV 244
++RD + +N+T E L L L P+S+ KWQ++ M + + G+ + E D +
Sbjct: 250 LLRDKLIALNETVEELPLNLEVGPISMTKWQIFLQ--MEQSFQVHRSYGSMLEGE-ADEL 306
Query: 245 KELLLDTSPYLLALTISVSILHSICELLAFKNDIQFWNNRQSLEGLSVRSVFFNVFQSTI 424
K + L+ +PY L LT+ VS+ HS+ + LAFKNDIQFWN +S+EGLS +SV N I
Sbjct: 307 KRVFLEGNPYFLGLTMIVSLFHSLFDFLAFKNDIQFWNKNKSMEGLSAKSVVLNFVCQLI 366
Query: 425 VLLYVLDNETNVMVRISCFIGLLIEIWKINKVMDVKINRESR 550
+ LY+LDNET+ M+ S IG+ IE WKI K M V+I+R +
Sbjct: 367 IFLYLLDNETSWMILGSSGIGVCIEFWKIGKAMHVEIDRSGK 408
>09_02_0523 +
10196272-10196375,10196551-10197488,10200247-10200896,
10201003-10201746
Length = 811
Score = 29.9 bits (64), Expect = 1.4
Identities = 18/81 (22%), Positives = 42/81 (51%)
Frame = +2
Query: 251 LLLDTSPYLLALTISVSILHSICELLAFKNDIQFWNNRQSLEGLSVRSVFFNVFQSTIVL 430
+L T ++ +L + S+++S + + ++ N+ SL LS+R + V+
Sbjct: 672 VLAITFAFVYSLLATFSLVYSGMTKVDYSIRLEHLNSANSLVWLSIRCLLAAFALGLYVV 731
Query: 431 LYVLDNETNVMVRISCFIGLL 493
L + ++T +++ + C +GLL
Sbjct: 732 LAPVAHKTALLICLMCSVGLL 752
>06_03_0732 +
23965090-23965431,23965610-23965746,23967359-23967417,
23968817-23970135
Length = 618
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -2
Query: 181 SHCLCSIKLPLEQTKWLICQL*VKNFCCFINRYIITHHIPSN 56
S C C + L E WL FCC +N YI+T+ +N
Sbjct: 109 SQCECEVSLVSELLLWL--------FCCALNLYILTYETGNN 142
>11_06_0722 - 26678873-26680843
Length = 656
Score = 29.1 bits (62), Expect = 2.5
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +3
Query: 378 DYLSVQYFLMFSSLQLYSSMFWIMKP-M*WLEYRV 479
DY +YFL++SS L+ ++ + M P WL Y++
Sbjct: 265 DYFYTKYFLIYSSHHLFVTLSFAMVPTCGWLAYKL 299
>05_04_0288 +
19839597-19839821,19841882-19842107,19842494-19842582,
19845184-19845387,19845463-19845717,19845796-19846011,
19846611-19846766,19846880-19847039,19847702-19847788,
19847789-19847940,19848006-19848143,19848714-19848788,
19849166-19849444
Length = 753
Score = 28.7 bits (61), Expect = 3.3
Identities = 23/107 (21%), Positives = 49/107 (45%), Gaps = 5/107 (4%)
Frame = +2
Query: 206 LGAEEQDEDQDTVKELLLDTSPYLLALTISVSILHSICELLAFKNDIQFWNNRQSLEGLS 385
L +E + +KEL + + L + + ++ +H IC +++ + ++ S L
Sbjct: 314 LSLRRLEEFKSQLKELQTEKNLRLQKIDVQINCIHEICNMMSLDLKKELYDVHPSFVELG 373
Query: 386 VRSVFFNVFQSTIVLL----YVLDNETNVMVRISCFIG-LLIEIWKI 511
R+ ++ ST+ L + L+ E +R +G LIE+W +
Sbjct: 374 -RTTSMSISDSTLERLAGKVHSLNQEKKQRLRKLQDLGSTLIELWNL 419
>10_08_0706 + 20034534-20034860,20034988-20035368
Length = 235
Score = 27.9 bits (59), Expect = 5.7
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 173 AMRDKLSM-FSALGAEEQDEDQDTVKELLLDTSPYLLALTISVSILHSICE 322
A+R KL++ F L E +ED ELLL ++P + + + ICE
Sbjct: 19 ALRVKLALSFKGLSYEYAEEDLSNKSELLLSSNPVHKKVPVLIHNGKPICE 69
>08_02_1567 -
27916010-27916118,27916256-27916391,27916675-27916771,
27916866-27916970,27917058-27917240,27917764-27917823,
27917909-27918096,27919234-27919294
Length = 312
Score = 27.9 bits (59), Expect = 5.7
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = +2
Query: 170 QAMRDKLSMFSALGAEEQDEDQDTVKELLLDTSPYLLALTISVSIL 307
Q RDKL + + G E E Q + K LL ++ PY L S++IL
Sbjct: 6 QIHRDKLIIDTDPGIENTSEFQPSRKLLLANSFPYKLVPDDSMTIL 51
>04_03_0937 +
20923705-20923833,20924001-20924012,20924413-20924473,
20924523-20924749,20924859-20925104,20925645-20925657,
20927681-20928302,20928320-20928949,20928960-20929224
Length = 734
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 296 LRLSMPANMEKCQVTIPLQCPGL 228
L LS ++ E+C+ T PL CP L
Sbjct: 410 LLLSDQSHFERCETTAPLACPTL 432
>03_03_0134 +
14732622-14732830,14733202-14733316,14733429-14733632,
14733862-14733990,14734077-14734244,14734920-14735177,
14736051-14736096,14736574-14736601,14737206-14737295,
14738132-14738204,14738291-14738319,14738425-14738548,
14738741-14738851,14739082-14739182,14739263-14739365
Length = 595
Score = 27.5 bits (58), Expect = 7.5
Identities = 9/38 (23%), Positives = 22/38 (57%)
Frame = +2
Query: 302 ILHSICELLAFKNDIQFWNNRQSLEGLSVRSVFFNVFQ 415
+ H++C L + + FW ++ EG + + ++F +F+
Sbjct: 86 VQHTLCSLHGIQKSLLFWQSK--AEGTNSQKMYFMIFE 121
>04_04_0308 +
24286923-24286927,24288430-24288907,24288980-24289099,
24289182-24289235,24289467-24289579,24289799-24290011,
24290123-24290201,24290323-24290376,24290448-24290522,
24291029-24291193,24291843-24291941,24292186-24292241,
24292331-24292433,24293289-24293417,24293657-24293835,
24293953-24293977,24294060-24294175,24294252-24294342
Length = 717
Score = 27.1 bits (57), Expect = 10.0
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -3
Query: 387 TDNPSKDCLLFQNCISFLNAKSSHIECKIETEIVNASKY 271
+DN KD +L F++ +S + CK + E SKY
Sbjct: 325 SDNRLKDLMLLLKSPPFVDMRSIIVYCKFQAETDFVSKY 363
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,076,858
Number of Sequences: 37544
Number of extensions: 243934
Number of successful extensions: 501
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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