Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0670
         (551 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27157| Best HMM Match : CLPTM1 (HMM E-Value=0)                     210   8e-55
SB_19802| Best HMM Match : fn3 (HMM E-Value=0)                         31   0.63 
SB_32865| Best HMM Match : AA_permease (HMM E-Value=7.7e-07)           29   2.5  
SB_19572| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_38184| Best HMM Match : HisKA_2 (HMM E-Value=8.6)                   27   7.7  

>SB_27157| Best HMM Match : CLPTM1 (HMM E-Value=0)
          Length = 1264

 Score =  210 bits (512), Expect = 8e-55
 Identities = 94/159 (59%), Positives = 131/159 (82%), Gaps = 2/159 (1%)
 Frame = +2

Query: 65  NMMRDYVPINKTTEVLNLQLTYQPLSLFKWQLYTAQAMRDKLSMFSALGAEEQ--DEDQD 238
           N+  +Y+PIN+TT  L+L LTY P+SLFKWQ+Y +Q MR K   FS LG + Q  +E+QD
Sbjct: 291 NLGSEYMPINETTPTLDLHLTYSPISLFKWQMYESQRMRQK--WFSVLGDDMQQSEEEQD 348

Query: 239 TVKELLLDTSPYLLALTISVSILHSICELLAFKNDIQFWNNRQSLEGLSVRSVFFNVFQS 418
            +K  +++T+PYLL +T+ V+++H++ E LAFKNDIQFW +R++LEGLSVRSVFFNVFQ+
Sbjct: 349 AMKRTIVETNPYLLGVTMIVTLVHTVFEFLAFKNDIQFWRSRKTLEGLSVRSVFFNVFQA 408

Query: 419 TIVLLYVLDNETNVMVRISCFIGLLIEIWKINKVMDVKI 535
           T+VLLYV DN+TN ++ ISCF+GLLIE+WKINKV+++K+
Sbjct: 409 TVVLLYVADNDTNTVIIISCFVGLLIELWKINKVVNIKM 447


>SB_19802| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 1075

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 32/127 (25%), Positives = 58/127 (45%), Gaps = 7/127 (5%)
 Frame = +2

Query: 110 LNLQLTYQPLSLFKWQLYTAQAMRDKLSMFSALGAEEQDEDQDTVKELLLDTSPYLLA-- 283
           LNL LT   L ++ W   T Q +  +    S       DED+ TV  L L++  + +   
Sbjct: 516 LNLNLTVSNLEIWTWYEVTVQVVTSRPGPRSPSVFVRTDEDETTVSILDLESISFKIQHN 575

Query: 284 LTISVSILHSICELLAFKNDIQF----WNNRQSLEGLSVR-SVFFNVFQSTIVLLYVLDN 448
           L IS ++  +   L +   D+      WN      G+ +R +V ++V  S+ V+   +  
Sbjct: 576 LNISSTVPSAPQNLSSHSLDVSTVALQWNPPLMPNGVLLRYTVSYSVQGSSNVMNVSIGL 635

Query: 449 ETNVMVR 469
           +T+ ++R
Sbjct: 636 DTHYILR 642


>SB_32865| Best HMM Match : AA_permease (HMM E-Value=7.7e-07)
          Length = 642

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +2

Query: 83  VPINKTTEVLNLQLTYQPLSLFKWQLYTAQAMRDKLSMFS-ALGAEEQDEDQDTVKELLL 259
           VP+   + V+  +     LS   W  +TA         F   L   E+D+D+D +K+ LL
Sbjct: 505 VPLIPISSVVINEYLLTNLSKLTWASFTAWTFIGMTVYFMYGLHHSEEDDDEDKLKQFLL 564

Query: 260 DTSP 271
             +P
Sbjct: 565 TLTP 568


>SB_19572| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 823

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 20/71 (28%), Positives = 32/71 (45%)
 Frame = +2

Query: 56  ITGNMMRDYVPINKTTEVLNLQLTYQPLSLFKWQLYTAQAMRDKLSMFSALGAEEQDEDQ 235
           + GN  R Y   N T  V+ L  T +   L K++  T Q ++  L   +   A + +   
Sbjct: 213 LAGNTARQYNSFNSTVHVILLNNTTRTTRLGKYKCSTIQLVQLDL---AGNTARQYNSFN 269

Query: 236 DTVKELLLDTS 268
            TV  +LLD +
Sbjct: 270 STVHVILLDNT 280


>SB_38184| Best HMM Match : HisKA_2 (HMM E-Value=8.6)
          Length = 528

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = +2

Query: 164 TAQAMRDKLSMFSALGAEEQDEDQDTVKELLLDTSPYLLALTISVSIL 307
           T+    +K   F +   EE+D      +++  DT+P+L+ L   + +L
Sbjct: 197 TSTFKSEKHKNFQSSSVEEEDGSMSLQQDVYEDTTPFLVDLAFDLGVL 244


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,006,474
Number of Sequences: 59808
Number of extensions: 309196
Number of successful extensions: 683
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)