Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0670
         (551 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   0.51 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.7  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   4.8  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   8.3  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    21   8.3  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    21   8.3  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 25.0 bits (52), Expect = 0.51
 Identities = 9/39 (23%), Positives = 20/39 (51%)
 Frame = -3

Query: 513 FIFQISINNPMKHDILTITLVSLSRT*RSTIVDWKTLKN 397
           ++    +   +KHDIL + ++ L +    ++ DW+   N
Sbjct: 351 YVKNSKLEKVIKHDILRMLIIDLRKKQLKSLEDWENEMN 389


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +2

Query: 188 LSMFSALGAEEQDEDQDTVKELLLDTSPYLLALTISVSILHSICELLAFKND 343
           LS + A+   +Q  D++ V +     +  L  L  +++IL  +CE    +ND
Sbjct: 287 LSGYHAIAGGQQRPDENVVTDKKSKVNFALPELQHNLNILVDMCEQDIIQND 338


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +1

Query: 1   LIYFLPDGKQYKPAVFLNDYW 63
           ++  LPDG +     F+++YW
Sbjct: 328 MVIILPDGIRNYLTKFVSEYW 348


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -3

Query: 528 TSITLFIFQISINNPMKHDILTITLVSLSRT*RSTIVDW 412
           T +T+  F +     + H  ++ T+  LSR  +  IV W
Sbjct: 141 TVLTITAFTVERYIAICHPFISHTMSKLSRAVKFIIVIW 179


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 420 VDWKTLKNTERTDNPSKDCLLFQ 352
           VD   + NTER  N   +CLL Q
Sbjct: 31  VDIDVVLNTERLLNAYVNCLLDQ 53


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 420 VDWKTLKNTERTDNPSKDCLLFQ 352
           VD   + NTER  N   +CLL Q
Sbjct: 31  VDIDVVLNTERLLNAYVNCLLDQ 53


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,299
Number of Sequences: 438
Number of extensions: 3391
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)