Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0670
         (551 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g23575.1 68418.m02766 transmembrane protein, putative similar...   142   1e-34
At5g08500.1 68418.m01007 transmembrane CLPTM1 family protein con...   138   3e-33
At5g40450.1 68418.m04905 expressed protein                             29   1.6  
At5g10010.1 68418.m01159 expressed protein                             29   2.1  
At5g23405.2 68418.m02742 high mobility group (HMG1/2) family pro...    27   6.3  
At5g23405.1 68418.m02741 high mobility group (HMG1/2) family pro...    27   6.3  
At5g46040.1 68418.m05662 proton-dependent oligopeptide transport...    27   8.3  
At3g18080.1 68416.m02299 glycosyl hydrolase family 1 protein con...    27   8.3  

>At5g23575.1 68418.m02766 transmembrane protein, putative similar to
           cleft lip and palate transmembrane protein 1 [Homo
           sapiens] GI:4039014; contains Pfam profile PF05602:
           Cleft lip and palate transmembrane protein 1 (CLPTM1)
          Length = 593

 Score =  142 bits (345), Expect = 1e-34
 Identities = 67/159 (42%), Positives = 105/159 (66%), Gaps = 1/159 (0%)
 Frame = +2

Query: 68  MMRD-YVPINKTTEVLNLQLTYQPLSLFKWQLYTAQAMRDKLSMFSALGAEEQDEDQDTV 244
           ++RD ++P+N+T   L L L   P+S+ KWQL+  Q +     M  + G+   D + D +
Sbjct: 263 LLRDKFIPVNETVSELPLNLEISPISMMKWQLF--QQVDQSFQMQRSYGSM-LDGESDEL 319

Query: 245 KELLLDTSPYLLALTISVSILHSICELLAFKNDIQFWNNRQSLEGLSVRSVFFNVFQSTI 424
           K++ L+ +PYLL +T+ VS+LHS+ + LAFKNDIQFWN  +S+EGLS +SV  N     +
Sbjct: 320 KKVFLEGNPYLLGITMFVSMLHSVFDFLAFKNDIQFWNKNKSMEGLSAKSVVLNFICQFV 379

Query: 425 VLLYVLDNETNVMVRISCFIGLLIEIWKINKVMDVKINR 541
           + LY+LDN+T+ M+  S  +G+ IE WKI K M ++++R
Sbjct: 380 IFLYLLDNDTSWMILASSGVGVCIEFWKIGKAMRIEVDR 418


>At5g08500.1 68418.m01007 transmembrane CLPTM1 family protein
           contains Pfam profile PF05602: Cleft lip and palate
           transmembrane protein 1 (CLPTM1)
          Length = 590

 Score =  138 bits (333), Expect = 3e-33
 Identities = 72/180 (40%), Positives = 111/180 (61%), Gaps = 4/180 (2%)
 Frame = +2

Query: 14  YLMVNNINLLYF*MITGN---MMRD-YVPINKTTEVLNLQLTYQPLSLFKWQLYTAQAMR 181
           YL+V    + Y+  +  N   ++RD  + IN+T   L L L   P+S+ KWQL+  Q + 
Sbjct: 240 YLLVEPSTINYYPTVFFNEFWLLRDKLILINETVSELPLNLEVSPISMTKWQLF--QQID 297

Query: 182 DKLSMFSALGAEEQDEDQDTVKELLLDTSPYLLALTISVSILHSICELLAFKNDIQFWNN 361
               +  + G+   D + D +K + L+ +PYLL +T+ VS+LHS+ + LAFKNDIQFWN 
Sbjct: 298 QSFQIHRSYGSM-LDGESDELKRVFLEGNPYLLGVTMFVSMLHSVFDFLAFKNDIQFWNK 356

Query: 362 RQSLEGLSVRSVFFNVFQSTIVLLYVLDNETNVMVRISCFIGLLIEIWKINKVMDVKINR 541
            +S+EGLS +SV  N     I+ LY+LDN+T+ M+  S  +G+ IE WKI K M ++++R
Sbjct: 357 NKSMEGLSAKSVVLNFICQFIIFLYLLDNDTSWMILASSGVGVCIEFWKIGKAMRIEVDR 416


>At5g40450.1 68418.m04905 expressed protein
          Length = 2910

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +2

Query: 218 EQDEDQDTVKELLLDTSPYLLALTISVSILHSICELLAFKND 343
           EQ+ED   + ++L DT+P  +        L+S+CE +  K D
Sbjct: 164 EQEEDIGNISKVLTDTTPVKVDEYDIEKSLNSVCEEIPIKTD 205


>At5g10010.1 68418.m01159 expressed protein 
          Length = 434

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +2

Query: 89  INKTTEVLNLQLTYQPLSL-FKWQLYTAQAMRDKLSMFSALGAEEQDEDQDTVKE 250
           + ++TEV  +  +  P+   F W+    Q   DKL    AL AE+ DE ++ VKE
Sbjct: 311 LEQSTEVQIMFPSEPPVVCEFDWEFDELQEFVDKLVEEEALPAEQADEFKEYVKE 365


>At5g23405.2 68418.m02742 high mobility group (HMG1/2) family
           protein contains Pfam profile PF00505: HMG (high
           mobility group) box
          Length = 148

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 152 WQLYTAQAMRDKLSMFSALGAEEQDEDQDTVKE 250
           W+++ +    +K        A+E+DED+DTV+E
Sbjct: 97  WEMWKSMTEDEKKDYLDK-AADEEDEDEDTVEE 128


>At5g23405.1 68418.m02741 high mobility group (HMG1/2) family
           protein contains Pfam profile PF00505: HMG (high
           mobility group) box
          Length = 149

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 152 WQLYTAQAMRDKLSMFSALGAEEQDEDQDTVKE 250
           W+++ +    +K        A+E+DED+DTV+E
Sbjct: 98  WEMWKSMTEDEKKDYLDK-AADEEDEDEDTVEE 129


>At5g46040.1 68418.m05662 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 586

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 392 SVFFNVFQSTIVLLYVLDN 448
           S+FF  F +T VL+YV DN
Sbjct: 196 SIFFGTFFATTVLVYVQDN 214


>At3g18080.1 68416.m02299 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to beta-glucosidase BGQ60 precursor GB:A57512
           [Hordeum vulgare]; similar to beta-mannosidase enzyme
           (GI:17226270) [Lycopersicon esculentum]
          Length = 512

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 85  YIITHHIPSNHLKIQQVYIVYHQVENK 5
           YI+THH+   H    Q Y  Y+Q + K
Sbjct: 241 YIVTHHLILAHAAAVQRYRKYYQAKQK 267


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,336,961
Number of Sequences: 28952
Number of extensions: 223041
Number of successful extensions: 507
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)