Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0669
         (553 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    26   4.2  
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa...    25   5.6  
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc...    25   9.8  

>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +3

Query: 165 GYELDEDGANCRDVDECERDTHTCQQICSNTEGSYECSCEDGYEKRGDACVDINECH 335
           G  + EDG  C   ++CE +     + C  T+GS    C+D    + DAC    +CH
Sbjct: 319 GNGIVEDGEECDCGEDCENNPCCDGKTCKLTKGSL---CDD----QQDAC--CYQCH 366


>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
           Swi6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
 Frame = -1

Query: 118 WSHGGGRTAHSSRPRTPR---PAGRYPGPHTQR 29
           W+  GGR   S R RT R   P  + P P +++
Sbjct: 132 WNEHGGRPEPSKRKRTARPKKPEAKEPSPKSRK 164


>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 393 SGTNPAGSRTAPGTDTRPPRD 331
           +G   A S  AP  DTRPP +
Sbjct: 292 AGLGGAASPPAPAQDTRPPEE 312


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,684,314
Number of Sequences: 5004
Number of extensions: 31734
Number of successful extensions: 90
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)