Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0665
(616 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha... 28 1.2
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 24 2.7
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom... 27 2.8
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 26 3.8
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy... 26 3.8
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 26 3.8
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 5.0
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 25 6.6
SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase YakC|Schizo... 25 6.6
SPAC17G8.10c |dma1||mitotic spindle checkpoint protein Dma1|Schi... 25 8.7
SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 25 8.7
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 25 8.7
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 25 8.7
>SPBC32H8.09 |||WD repeat protein, human WDR8
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = -1
Query: 523 QVHGVYRRGFYISRICWIRPSQ*SLR 446
+V GV ++GF I ++ W++PS+ S R
Sbjct: 407 RVVGVPKKGFNIQKVQWLQPSEFSSR 432
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 23.8 bits (49), Expect(2) = 2.7
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = +1
Query: 511 PREPGDGRLQHDNPLHRHGNTNPN 582
P PG+G + +NP + + +PN
Sbjct: 114 PPNPGNGNVGLNNPSYMNSQASPN 137
Score = 21.0 bits (42), Expect(2) = 2.7
Identities = 7/20 (35%), Positives = 11/20 (55%)
Frame = +1
Query: 556 HRHGNTNPNNISIYIWSFSE 615
H + N N NN+ +Y S+
Sbjct: 159 HTNTNANSNNLKVYANQLSQ 178
>SPAC31G5.15 |||phosphatidylserine decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 980
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 264 SSRKLTRRSPTHYSSNLQLKWV 329
S R +SP+H NL LKW+
Sbjct: 153 SGRNKENQSPSHQICNLSLKWI 174
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 26.2 bits (55), Expect = 3.8
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = -1
Query: 436 VSSCSVSFHPHYVLGVRGKLLQRISRYCGGDIRDICTHLSWRFEE*CVGDLLVSLR 269
VSS S S H L K LQ + + GDI+ + L + ++ C L +S++
Sbjct: 9 VSSTSSSDHKKAELSDSLKQLQLLQAFQAGDIKQVDNLLHNKSKDECTHALFISIQ 64
>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 794
Score = 26.2 bits (55), Expect = 3.8
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 313 SNSNGCKYHEYHHHSTWIYVGEAYPEH 393
+ SNG +H +HHH +V Y +H
Sbjct: 736 NGSNGGHHHHHHHHYITGHVYGGYHKH 762
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 26.2 bits (55), Expect = 3.8
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 62 HESLEVNSTCHAFVVAVNEHGSSLPSSMLLFNVTEEEQEV 181
H++ E H + +NE G + ML F EEE++V
Sbjct: 400 HKANEEIEFLHDQISRMNEEGKNFEDIMLQFRSLEEERDV 439
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
EF hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.8 bits (54), Expect = 5.0
Identities = 11/35 (31%), Positives = 15/35 (42%)
Frame = -1
Query: 604 TRYI*RYCWGWCSHGDAKDCHAGAFHHQVHGVYRR 500
TR + W C HGD F +H +YR+
Sbjct: 855 TRTELEHIWNLCDHGDKGSLDRDEFAVALHLIYRK 889
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 25.4 bits (53), Expect = 6.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 290 TYTLFFKSPTQMGANITNITTTVPGYT 370
T T+ ++PT + A T+I T GYT
Sbjct: 823 TTTVVIQTPTTVTATETDIVTVTTGYT 849
Score = 25.4 bits (53), Expect = 6.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 290 TYTLFFKSPTQMGANITNITTTVPGYT 370
T T+ ++PT + A T+I T GYT
Sbjct: 867 TTTVVIQTPTTVTATETDIVTVTTGYT 893
Score = 25.4 bits (53), Expect = 6.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 290 TYTLFFKSPTQMGANITNITTTVPGYT 370
T T+ ++PT + A T+I T GYT
Sbjct: 911 TTTVVIQTPTTVTATETDIVTVTTGYT 937
Score = 25.4 bits (53), Expect = 6.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 290 TYTLFFKSPTQMGANITNITTTVPGYT 370
T T+ ++PT + A T+I T GYT
Sbjct: 955 TTTVVIQTPTTVTATETDIVTVTTGYT 981
Score = 25.4 bits (53), Expect = 6.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 290 TYTLFFKSPTQMGANITNITTTVPGYT 370
T T+ ++PT + A T+I T GYT
Sbjct: 999 TTTVVIQTPTTVTATETDIVTVTTGYT 1025
Score = 25.4 bits (53), Expect = 6.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 290 TYTLFFKSPTQMGANITNITTTVPGYT 370
T T+ ++PT + A T+I T GYT
Sbjct: 1043 TTTVVIQTPTTVTATETDIVTVTTGYT 1069
Score = 25.4 bits (53), Expect = 6.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 290 TYTLFFKSPTQMGANITNITTTVPGYT 370
T T+ ++PT + A T+I T GYT
Sbjct: 1087 TTTVVIQTPTTVTATETDIVTVTTGYT 1113
>SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase
YakC|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 25.4 bits (53), Expect = 6.6
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +2
Query: 359 PGYTLEKLTPNTQYIVWVKAHATAGDSLPSETLLAW 466
P Y E N + + ++ ATA + P + LAW
Sbjct: 235 PRYQKENFYKNLELVTKIEKIATANNITPGQLSLAW 270
>SPAC17G8.10c |dma1||mitotic spindle checkpoint protein
Dma1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 547 NPLHRHGNTNPNNISIYIWSFSE 615
+PL R+ N NN+ IYI ++E
Sbjct: 45 DPLVRYWNRKQNNLPIYIGRYTE 67
>SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 288
Score = 25.0 bits (52), Expect = 8.7
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 437 SLPSETLLAWTDPAYPAYVEPPTVNPVNLVMEGSSMTI 550
S+ S TLL DP +E + N ++ V E S ++
Sbjct: 85 SITSPTLLTSVDPVLYQQLEASSTNDISTVFEDESSSL 122
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 311 SPTQMGANITNITTTVPGYTLEKLTPNTQYIVWVKA 418
SP + G+ NI V +TL+ P QY W +A
Sbjct: 429 SPLRSGSKTWNIFQLVEQFTLKFYPPQVQY--WARA 462
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +1
Query: 481 SCLCRTPDGKPREPG-DGRLQHDNPL 555
+C+ + PD P +PG GR + NP+
Sbjct: 440 ACIIKHPDDVPSKPGRRGRRREKNPM 465
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,828,109
Number of Sequences: 5004
Number of extensions: 61143
Number of successful extensions: 201
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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