Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0665
         (616 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0600 - 4462337-4462774                                           34   0.10 
05_06_0275 - 26869155-26870480                                         32   0.42 
04_04_0790 + 28083116-28083337,28083446-28083652,28083739-280838...    30   1.7  
01_06_1357 + 36632992-36633621,36634003-36635136,36635525-366361...    29   2.2  
09_01_0028 + 486800-486890,486928-488009,488825-489190,489342-48...    29   2.9  
12_01_0761 + 6913969-6914346                                           29   3.9  
04_04_0662 - 27051508-27051828,27051878-27053438,27054333-27054733     28   5.1  
02_04_0413 + 22681957-22682035,22682253-22682788                       24   8.4  

>07_01_0600 - 4462337-4462774
          Length = 145

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = +3

Query: 117 STAPRCHPACCCLTLPKRSKK----FLVSHPTHIRCPYRHT 227
           +TA  C+ A C  ++P RS+     +  S P H+R P RHT
Sbjct: 23  ATASLCNRAACFSSMPPRSRAVDAAYCYSAPVHLRLPVRHT 63


>05_06_0275 - 26869155-26870480
          Length = 441

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = -1

Query: 352 GGDIRDICTHLSWRFEE*CVGDLLVSL-RELRWLPGQGKPRGGV*RYGQRMWVGWDTRNF 176
           GG + D+      R EE  VG+  V + R L +L G G   G V    + + +G D R  
Sbjct: 93  GGSLADVAARCGGRMEECAVGEYAVDVARGLAYLHGMGLVHGDV--KARNVVIGGDGRAK 150

Query: 175 LLLFGNVKQQHAG 137
           L  FG  +   +G
Sbjct: 151 LADFGCARWADSG 163


>04_04_0790 +
           28083116-28083337,28083446-28083652,28083739-28083809,
           28083898-28084063,28084189-28084788,28084928-28085323
          Length = 553

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 19/50 (38%), Positives = 23/50 (46%)
 Frame = +2

Query: 446 SETLLAWTDPAYPAYVEPPTVNPVNLVMEGSSMTILCIAMGTPTPTISLY 595
           SE LL W DP +P Y+  P V+      E     IL +A  T  P   LY
Sbjct: 197 SEDLLCWEDPDHPKYIYTPEVS------EDGKYVILSVA-ETSEPVNKLY 239


>01_06_1357 +
           36632992-36633621,36634003-36635136,36635525-36636193,
           36636250-36636343,36636378-36636490
          Length = 879

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +2

Query: 230 ATWLTLTWQPPQFSQA 277
           +TWL L W+PP+F++A
Sbjct: 471 STWLHLQWEPPEFARA 486


>09_01_0028 +
           486800-486890,486928-488009,488825-489190,489342-489692
          Length = 629

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 80  NSTCHAFVVAVNEHGSSLPSSMLLFNVTEEEQEVS 184
           N  C  F+  +N HG SL    LLF V E+ ++++
Sbjct: 374 NMPCAPFI-GINRHGQSLQHIQLLFVVQEDSRKIT 407


>12_01_0761 + 6913969-6914346
          Length = 125

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 19/73 (26%), Positives = 34/73 (46%)
 Frame = +2

Query: 371 LEKLTPNTQYIVWVKAHATAGDSLPSETLLAWTDPAYPAYVEPPTVNPVNLVMEGSSMTI 550
           + +L P++ +IV   A      S P  T++   DP YP  V     +PV++  +   +T 
Sbjct: 37  IRRLRPSSGHIVVTAA------SPPGSTVITVADPTYPVVVATALASPVDVATD--PVTA 88

Query: 551 LCIAMGTPTPTIS 589
           +  A    TP ++
Sbjct: 89  VAPAADLSTPIVA 101


>04_04_0662 - 27051508-27051828,27051878-27053438,27054333-27054733
          Length = 760

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +2

Query: 278 DEKITYTLFFKSPTQMGANITNITTTVPGYTLEKLTPNTQYIVWVK 415
           D K+ Y + F+ P   GAN      T P   +   TP + ++  V+
Sbjct: 715 DGKMQYRIQFQRPNPGGANTAPPPATTPASAVPTSTPTSTFLAMVQ 760


>02_04_0413 + 22681957-22682035,22682253-22682788
          Length = 204

 Score = 24.2 bits (50), Expect(2) = 8.4
 Identities = 13/36 (36%), Positives = 13/36 (36%)
 Frame = +3

Query: 126 PRCHPACCCLTLPKRSKKFLVSHPTHIRCPYRHTPP 233
           P C P CCC            S P    CP   TPP
Sbjct: 140 PPCKPGCCCCGCSGGECPPPPSPPCQHECP--PTPP 173



 Score = 21.8 bits (44), Expect(2) = 8.4
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +3

Query: 108 PSTSTAPRCHPACC 149
           P  S +P  HP CC
Sbjct: 95  PPPSPSPCVHPPCC 108


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,057,987
Number of Sequences: 37544
Number of extensions: 466046
Number of successful extensions: 1405
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1403
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)