Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0665
(616 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g02190.1 68417.m00291 DC1 domain-containing protein contains ... 31 0.61
At2g19240.1 68415.m02246 RabGAP/TBC domain-containing protein lo... 29 1.9
At5g47770.1 68418.m05901 farnesyl pyrophosphate synthetase 1, mi... 29 2.4
At5g58120.1 68418.m07272 disease resistance protein (TIR-NBS-LRR... 29 3.2
At4g19500.1 68417.m02868 disease resistance protein (TIR-NBS-LRR... 28 4.3
At3g16580.1 68416.m02120 F-box family protein contains F-box dom... 28 4.3
At5g03990.1 68418.m00379 expressed protein predicted protein, Ar... 28 5.7
At4g01250.1 68417.m00164 WRKY family transcription factor contai... 28 5.7
At1g31750.1 68414.m03895 proline-rich family protein contains pr... 28 5.7
At1g05580.1 68414.m00578 cation/hydrogen exchanger, putative (CH... 28 5.7
At1g02065.2 68414.m00127 squamosa promoter-binding protein-like ... 27 7.5
At1g02065.1 68414.m00128 squamosa promoter-binding protein-like ... 27 7.5
At5g46220.1 68418.m05688 expressed protein contains Pfam profile... 27 9.9
>At4g02190.1 68417.m00291 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 659
Score = 31.1 bits (67), Expect = 0.61
Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 2/85 (2%)
Frame = -1
Query: 571 CSHGDAKDCHAGAFHHQVHGVYRR--GFYISRICWIRPSQ*SLRRQGVSSCSVSFHPHYV 398
C+H DC G F G Y + F++ + C S+ S HP +
Sbjct: 19 CNHLRKGDC-CGRFEAISDGYYCKTCDFFVHKKCVDEASE---------SIEHPSHPGHT 68
Query: 397 LGVRGKLLQRISRYCGGDIRDICTH 323
L + K R CG DI+D+C H
Sbjct: 69 LQLLSKQKYRYCNLCGRDIKDLCYH 93
>At2g19240.1 68415.m02246 RabGAP/TBC domain-containing protein low
similarity to SP|Q08484 GTPase-activating protein GYP1
{Saccharomyces cerevisiae}; contains Pfam profile
PF00566: TBC domain
Length = 840
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = +2
Query: 32 KTNDTMVT---IQHESLEVNSTCHAFVVAVNEHGSSLPSSMLLFNVTEEEQEVSG 187
K N + VT ++ S ++N CH V N H +++ F+ +EE VSG
Sbjct: 532 KANSSPVTQSLLEDSSEQLNVDCHVTVNKENIHPQETEENIMEFHSADEESIVSG 586
>At5g47770.1 68418.m05901 farnesyl pyrophosphate synthetase 1,
mitochondrial (FPS1) / FPP synthetase 1 / farnesyl
diphosphate synthase 1 identical to SP|Q09152 Farnesyl
pyrophosphate synthetase 1, mitochondrial precursor (FPP
synthetase 1) (FPS 1) (Farnesyl diphosphate synthetase
1) [Includes: Dimethylallyltransferase (EC 2.5.1.1);
Geranyltranstransferase (EC 2.5.1.10)] {Arabidopsis
thaliana}
Length = 384
Score = 29.1 bits (62), Expect = 2.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 141 ACCCLTLPKRSKKFLVSHPTHIR 209
+CCC L K KK + SH H+R
Sbjct: 4 SCCCRNLGKTIKKAIPSHHLHLR 26
>At5g58120.1 68418.m07272 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1046
Score = 28.7 bits (61), Expect = 3.2
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = +2
Query: 413 KAHATAGDSLPSET-LLAWTDPAYPAYVEPPTVNP---VNLVMEGSSM 544
+ H AG P LL W AYP+ PPT NP V L M+GS +
Sbjct: 570 RMHIPAGIEFPCLLRLLHWE--AYPSKCLPPTFNPEFLVELNMQGSQL 615
>At4g19500.1 68417.m02868 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein. A false
intron was added between exons 2 and 3 to circumvent a
frameshift caused by a sequencing error, as per Blake
Meyers (bcmeyers@vegmail.ucdavis.edu)
Length = 1308
Score = 28.3 bits (60), Expect = 4.3
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +2
Query: 434 DSLPSE-TLLAWTDPAYPAYVEPPTVNPVNLV 526
D+LP E +LL W + YP P NPVNLV
Sbjct: 1118 DTLPDELSLLHWEN--YPLVYLPQKFNPVNLV 1147
>At3g16580.1 68416.m02120 F-box family protein contains F-box domain
Pfam:PF00646
Length = 382
Score = 28.3 bits (60), Expect = 4.3
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +1
Query: 334 YHEYHHHSTWIYVGEAYPEHPVHSVGESSRYSWRLLAF*D 453
++ + HSTWI G + + +G +++ S+++ AF D
Sbjct: 117 WNPWLRHSTWIDQGSNHTRMESYGIGYNNKGSYKIFAFCD 156
>At5g03990.1 68418.m00379 expressed protein predicted protein,
Arabidopsis thaliana
Length = 302
Score = 27.9 bits (59), Expect = 5.7
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1
Query: 274 LRELRWLPGQGKPRGGV*RYGQRMWVGWDTRNF 176
+ + RW G+G+ RGG ++ W GW T +F
Sbjct: 272 VEDCRWRNGRGRSRGGFQQHSANAW-GW-TESF 302
>At4g01250.1 68417.m00164 WRKY family transcription factor contains
Pfam profile: PF03106 WRKY DNA -binding domain
Length = 298
Score = 27.9 bits (59), Expect = 5.7
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 347 TTTVPGYTLEKLTPNTQYIVWVKAHATAGDSLPSETLLAWTD 472
TTT+ Y+ +T ++++ V+ H GD E LL+ +D
Sbjct: 212 TTTIATYSSSPVTSADEFVLPVEDHLAVGDLDGEEDLLSLSD 253
>At1g31750.1 68414.m03895 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 176
Score = 27.9 bits (59), Expect = 5.7
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -1
Query: 544 HAGAFHHQVHGVYRRGFY 491
H G + H HG Y+RGF+
Sbjct: 108 HHGGYGHHGHGKYKRGFF 125
>At1g05580.1 68414.m00578 cation/hydrogen exchanger, putative
(CHX23) monovalent cation:proton antiporter family 2
(CPA2) member, PMID:11500563
Length = 867
Score = 27.9 bits (59), Expect = 5.7
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 585 IVGVGVPMAMQRIVMLEPSITRFTGFTV 502
++G+G+ + M RI L+P I FTG V
Sbjct: 128 LLGLGMDLRMVRITELKPVIIAFTGLLV 155
>At1g02065.2 68414.m00127 squamosa promoter-binding protein-like 8
(SPL8) identical to squamosa promoter binding
protein-like 8 [Arabidopsis thaliana] GI:5931679;
contains Pfam profile PF03110: SBP domain
Length = 246
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/45 (24%), Positives = 23/45 (51%)
Frame = +1
Query: 229 RHVAYPDLAATAVLAS*REDHLHIILQISNSNGCKYHEYHHHSTW 363
RH+ ++ ++ HL + Q +++N +H +HHHS +
Sbjct: 44 RHITISPPLLSSFSNQQQQHHLTLYGQTNSNNQFLHHHHHHHSLY 88
>At1g02065.1 68414.m00128 squamosa promoter-binding protein-like 8
(SPL8) identical to squamosa promoter binding
protein-like 8 [Arabidopsis thaliana] GI:5931679;
contains Pfam profile PF03110: SBP domain
Length = 333
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/45 (24%), Positives = 23/45 (51%)
Frame = +1
Query: 229 RHVAYPDLAATAVLAS*REDHLHIILQISNSNGCKYHEYHHHSTW 363
RH+ ++ ++ HL + Q +++N +H +HHHS +
Sbjct: 44 RHITISPPLLSSFSNQQQQHHLTLYGQTNSNNQFLHHHHHHHSLY 88
>At5g46220.1 68418.m05688 expressed protein contains Pfam profile
PF04765: Protein of unknown function (DUF616)
Length = 465
Score = 27.1 bits (57), Expect = 9.9
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = +2
Query: 356 VPGYTLEKLTPNTQYIVWVKA 418
+P Y + +L PN+++ +WV A
Sbjct: 247 IPKYLIHRLFPNSKFSIWVDA 267
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,356,751
Number of Sequences: 28952
Number of extensions: 345722
Number of successful extensions: 1084
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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