Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0660
         (368 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    26   2.1  
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    25   3.7  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   4.9  
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom...    24   8.6  
SPAC3G6.05 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1...    24   8.6  

>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 71  GEWLPLPMDFSNTRCRAKPL 12
           GEW  +P    N +CRAK L
Sbjct: 478 GEWNTVPGHHKNPKCRAKKL 497


>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 136 HNLIIFFFLLPM*VDKHTAHLMASG 62
           H L++F FL    +D H  HL  SG
Sbjct: 273 HALVVFLFLPVCCLDPHFLHLSFSG 297


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 240  SYINWSLYVLLRCILICQKYTVTIKTNN 323
            +YI   L  L+ C+ IC  + V  K N+
Sbjct: 1335 NYIRILLLPLMECMAICASFAVEAKIND 1362


>SPCC1442.02 ||SPCC1450.18|DUF1760 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 562

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = -2

Query: 88  HTAHLMASGYRCPWTSAIPGAEPSRCL 8
           H  H MAS    PW      A  ++CL
Sbjct: 400 HGYHFMASSTELPWLRVTCNAIVTKCL 426


>SPAC3G6.05 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 206

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +2

Query: 227 WNMFLVYKLEFICFIKVYFNL 289
           W M L Y++ F C + +++N+
Sbjct: 165 WLMPLQYQMPFACTVAIFWNI 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,499,022
Number of Sequences: 5004
Number of extensions: 28713
Number of successful extensions: 65
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)