Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0660
         (368 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0008 - 233137-233279,233712-233827,235376-235720,236218-23...    27   6.1  
08_01_0648 + 5602454-5602513,5602913-5603000,5603128-5604248,560...    27   6.1  
01_05_0106 + 18160018-18160243,18160423-18160470,18160816-181609...    27   6.1  
08_01_0650 + 5617578-5618633,5619580-5619735,5619816-5620058           26   8.1  
07_03_1526 + 27456426-27456700,27457936-27458023,27458129-274587...    26   8.1  

>09_01_0008 -
           233137-233279,233712-233827,235376-235720,236218-236292,
           236508-236636,237516-237589,237836-237968,239366-239584,
           239671-239756,239843-241107,241304-241640,242548-242862,
           243614-243697,243776-243883,243981-244079
          Length = 1175

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 210 LYSMDLGICFSYINWSLYVLLRCILICQ-KYTVTIKTNNDV 329
           + S+DLG          Y  L CILIC+  Y VT++   ++
Sbjct: 788 IVSVDLGYVSLLTKLMAYGSLSCILICEPNYIVTVEDGRNL 828


>08_01_0648 +
           5602454-5602513,5602913-5603000,5603128-5604248,
           5605146-5605217,5605218-5605373,5605458-5605748
          Length = 595

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +1

Query: 19  LALHLVLLKSMGNGNHSPSGGPYACLPTLAIKKKKLLSCVEKNL 150
           L LHL ++   G G+  PSGG +AC     ++K K+  C +  +
Sbjct: 493 LYLHLDMIHR-GRGDIDPSGGSFAC---NNLRKVKITCCKDDEM 532


>01_05_0106 +
           18160018-18160243,18160423-18160470,18160816-18160974,
           18162056-18162219,18162778-18162885,18163695-18163865,
           18163945-18164478,18164574-18164648,18164724-18164852,
           18164975-18165049,18165129-18165338,18165529-18165681,
           18165763-18165986,18166305-18166422,18166518-18166656,
           18166745-18166946,18166981-18167149,18167190-18167267,
           18167268-18167408,18167717-18167819,18169024-18169324,
           18169450-18169518,18169602-18169626,18170946-18170975
          Length = 1216

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 82  AHLMASGYRCPWTSAIPGA 26
           AH++AS  RCP  S + GA
Sbjct: 677 AHILASAQRCPPVSGVEGA 695


>08_01_0650 + 5617578-5618633,5619580-5619735,5619816-5620058
          Length = 484

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 19  LALHLVLLKSMGNGNHSPSGGPYACLPTLAIKKKKLLSC 135
           L +HL ++   G G+  PSGG +AC     +KK K+  C
Sbjct: 398 LYIHLDMVHR-GRGDIDPSGGSFAC---NNLKKVKITCC 432


>07_03_1526 +
           27456426-27456700,27457936-27458023,27458129-27458725,
           27458731-27460056,27460283-27460729
          Length = 910

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 10/41 (24%), Positives = 19/41 (46%)
 Frame = +2

Query: 179 MVLNRFSNVLIIQYGSWNMFLVYKLEFICFIKVYFNLSKVY 301
           +++NR    L  +Y  W  F++Y       +   F + K+Y
Sbjct: 191 IIINRVQGALGRKYVFWRPFILYSCMLAAIVMPMFMIEKLY 231


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,137,463
Number of Sequences: 37544
Number of extensions: 170897
Number of successful extensions: 375
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)