Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0660
         (368 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54654| Best HMM Match : rve (HMM E-Value=0.0035)                    26   8.3  
SB_12604| Best HMM Match : PsbH (HMM E-Value=5.9)                      26   8.3  

>SB_54654| Best HMM Match : rve (HMM E-Value=0.0035)
          Length = 466

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = -3

Query: 303 RYTFDKL--KYTLIKHINSNLYTRNIFQDPYCIIKTFENLFSTMNYF 169
           RYT   +  +YT I H+     T N   + Y  I+ F    +T N+F
Sbjct: 392 RYTTTNVFNRYTAINHLFIRYTTTNDLFNRYASIELFNRYTTTNNFF 438


>SB_12604| Best HMM Match : PsbH (HMM E-Value=5.9)
          Length = 105

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 94 DKHTAHLMASGYRCPWTSAIPGAEPSRCL 8
          + +T + + +GY   ++S  PG EP +CL
Sbjct: 13 NNNTEYRLQAGYGLRFSSKRPGYEPGQCL 41


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,730,598
Number of Sequences: 59808
Number of extensions: 189529
Number of successful extensions: 355
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 594991920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)