Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0658
(607 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0386 + 33555682-33556344,33557138-33557299 262 2e-70
07_01_0756 + 5819367-5820038,5820847-5821005 259 1e-69
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 67 9e-12
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 47 1e-05
11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509... 29 2.9
01_06_0210 - 27559090-27559239,27560445-27560567,27561069-275611... 28 5.0
11_01_0395 + 2999855-2999920,3000605-3002191 28 6.6
11_01_0515 + 4003167-4003229,4003318-4003738,4004224-4004367,400... 27 8.7
05_07_0112 - 27755604-27756449,27756624-27756887,27757428-277575... 27 8.7
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 262 bits (642), Expect = 2e-70
Identities = 116/151 (76%), Positives = 139/151 (92%)
Frame = +3
Query: 153 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 332
++++++WVPVTKLGRLV+EG+ K+E IYL SLP+KE +I++ + P L DEV+KI PVQ
Sbjct: 38 RQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVKEHQIVETLV-PGLKDEVMKITPVQ 96
Query: 333 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNK 512
KQTRAGQRTRFKAFV +GDNNGH+GLGVKC+KEVATAIRGAIILAKLSV+PVRRGYWGNK
Sbjct: 97 KQTRAGQRTRFKAFVVVGDNNGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGYWGNK 156
Query: 513 IGKPHTVPCKVTGKCGSVTVRLIPAPRGTGI 605
IG+PHTVPCKVTGKCGSVTVR++PAPRG+GI
Sbjct: 157 IGQPHTVPCKVTGKCGSVTVRMVPAPRGSGI 187
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 259 bits (634), Expect = 1e-69
Identities = 116/151 (76%), Positives = 138/151 (91%)
Frame = +3
Query: 153 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 332
++++++WVPVTKLGRLV+E KI K+E IYL SLP+KE +I++ + P L DEV+KI PVQ
Sbjct: 41 RQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVKEHQIVEQLV-PGLKDEVMKITPVQ 99
Query: 333 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNK 512
KQTRAGQRTRFKAFV +GD +GH+GLGVKC+KEVATAIRGAIILAKLSV+PVRRGYWGNK
Sbjct: 100 KQTRAGQRTRFKAFVVVGDGDGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGYWGNK 159
Query: 513 IGKPHTVPCKVTGKCGSVTVRLIPAPRGTGI 605
IGKPHTVPCKVTGKCGSVTVR++PAPRG+GI
Sbjct: 160 IGKPHTVPCKVTGKCGSVTVRMVPAPRGSGI 190
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 67.3 bits (157), Expect = 9e-12
Identities = 39/79 (49%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Frame = +3
Query: 372 FVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG-KPHTVPCKVT 548
FV +GD + HI LGVKC+K AT + GAIILA + G I KPHTV CKV
Sbjct: 2 FVVVGDGDSHIELGVKCAK--ATTMSGAIILA---MFRCAEGATRETISRKPHTVSCKVA 56
Query: 549 GKCGSVTVRLIPAPRGTGI 605
K GSVTVR++ P G+ +
Sbjct: 57 DKYGSVTVRMMLPPMGSSV 75
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/63 (33%), Positives = 39/63 (61%)
Frame = +3
Query: 300 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV 479
++ V+++ V K + G++ F+A V +GD GH+G+GV +KEV AI A + + ++
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEAITKAAMNGRRNL 230
Query: 480 LPV 488
+ V
Sbjct: 231 VTV 233
>11_04_0439 +
17749634-17749858,17750164-17750301,17750770-17750943,
17751099-17751184,17751264-17751525,17751616-17751815,
17753631-17754086,17754198-17754474,17754694-17754828,
17754946-17755026,17756305-17756400,17756676-17756771,
17756844-17756900,17756975-17757043,17757158-17757237,
17758185-17758329,17758422-17758511,17758914-17758994,
17759103-17759198,17759279-17759335,17759417-17759461,
17759547-17759612,17760304-17760350,17762771-17762865,
17763375-17763393,17763438-17763498,17763637-17763660
Length = 1085
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -3
Query: 434 DFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHD 318
+F+A LHT +M V +E C LS F+ +HD
Sbjct: 655 EFIAYLHTYVDMLHKVDEIGDTMEDCYLSSPIKFVSKHD 693
>01_06_0210 -
27559090-27559239,27560445-27560567,27561069-27561128,
27562045-27562068,27562313-27562653,27562684-27563731
Length = 581
Score = 28.3 bits (60), Expect = 5.0
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +1
Query: 187 NSAVLFAK-EKSTNSRAFTCFLYQSKNSRSLISSSARP*MMRFLRSCLYRNKHVPDSAHV 363
N AV+ A K RAF +YQS +R + S +P L CL + ++ +AHV
Sbjct: 381 NDAVVTALCSKGEVVRAFQ--VYQSMRTRGI---STKPTTFHLLVECLSKKNNLEKAAHV 435
Query: 364 SRHLL 378
R +L
Sbjct: 436 VRDML 440
>11_01_0395 + 2999855-2999920,3000605-3002191
Length = 550
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +3
Query: 240 LFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRT 359
+F +++ ++IDF L L D + I+P+ R G++T
Sbjct: 237 MFGRRVEKEKVIDFLLCSDLPDTYVSILPIIGPHRIGKKT 276
>11_01_0515 +
4003167-4003229,4003318-4003738,4004224-4004367,
4004474-4004556,4004661-4004775,4005309-4005400,
4005558-4005612,4005689-4005834,4005888-4006001,
4006149-4006342,4006985-4007112,4008526-4008583,
4009800-4009876,4010214-4010263,4010336-4010515,
4010633-4010731,4010816-4011133,4011221-4011281,
4011693-4012781,4012951-4013005,4013133-4013291,
4013923-4014442
Length = 1406
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +3
Query: 156 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLG 290
+ KE +P G V G+ +++ + SLPIK++ + FF G
Sbjct: 805 DGSKEVIPQEYCGLEVLSGEAAWSKNVLVPSLPIKKYPVHSFFSG 849
>05_07_0112 -
27755604-27756449,27756624-27756887,27757428-27757532,
27757626-27758249,27759048-27759596,27759665-27760372,
27760449-27760658,27761266-27761421,27761524-27761664,
27762015-27762101,27762209-27762309,27763071-27763293,
27763384-27763548,27763621-27763713,27763801-27764292,
27764729-27764805,27765184-27765681,27765818-27766046
Length = 1855
Score = 27.5 bits (58), Expect = 8.7
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = -1
Query: 559 PHLPVTL-QGTVCGFPILLPQ*PLRTGRTDSLARIIAPRMAVATSLLHFTPKPI*PLLSP 383
PH +T+ G + G P+L P TGR ++ RI A +A + P+ + P L+P
Sbjct: 141 PHSELTMGTGGMYGEPLLSPSSRRGTGRPSAVPRISASEVA---RRYYEPPQVMLPPLAP 197
Query: 382 M-ATNALKRV 356
M T A RV
Sbjct: 198 MQLTRAEHRV 207
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,368,744
Number of Sequences: 37544
Number of extensions: 373721
Number of successful extensions: 1063
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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