Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0658
(607 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 278 2e-75
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 272 1e-73
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 272 1e-73
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 272 1e-73
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 272 1e-73
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 270 5e-73
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 57 1e-08
At1g80480.1 68414.m09427 PRLI-interacting factor L, putative sim... 29 2.4
At3g18530.1 68416.m02357 expressed protein similar to unknown pr... 29 3.2
At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi... 28 4.2
At3g01450.1 68416.m00069 expressed protein 28 4.2
At2g04050.1 68415.m00386 MATE efflux family protein similar to r... 28 5.5
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 27 7.3
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 27 7.3
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 27 7.3
At4g03740.1 68417.m00513 hypothetical protein 27 7.3
At3g61940.1 68416.m06956 zinc transporter, putative similar to z... 27 7.3
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 278 bits (682), Expect = 2e-75
Identities = 122/149 (81%), Positives = 142/149 (95%)
Frame = +3
Query: 159 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 338
++++WVPVTKLGRLV+EGKI K+E IYL SLP+KE++IID +GPSL DEV+KIMPVQKQ
Sbjct: 41 EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVKEYQIIDLLVGPSLKDEVMKIMPVQKQ 100
Query: 339 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG 518
TRAGQRTRFKAF+ +GD+NGH+GLGVKCSKEVATAIRGAIILAKLSV+P+RRGYWGNKIG
Sbjct: 101 TRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVVPIRRGYWGNKIG 160
Query: 519 KPHTVPCKVTGKCGSVTVRLIPAPRGTGI 605
KPHTVPCKVTGKCGSVTVR++PAPRG+GI
Sbjct: 161 KPHTVPCKVTGKCGSVTVRMVPAPRGSGI 189
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 272 bits (667), Expect = 1e-73
Identities = 122/149 (81%), Positives = 138/149 (92%)
Frame = +3
Query: 159 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 338
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQ
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108
Query: 339 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG 518
TRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG
Sbjct: 109 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIG 168
Query: 519 KPHTVPCKVTGKCGSVTVRLIPAPRGTGI 605
KPHTVPCKVTGKCGSVTVR++PAPRG+GI
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGI 197
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 272 bits (667), Expect = 1e-73
Identities = 122/149 (81%), Positives = 138/149 (92%)
Frame = +3
Query: 159 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 338
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQ
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108
Query: 339 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG 518
TRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG
Sbjct: 109 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIG 168
Query: 519 KPHTVPCKVTGKCGSVTVRLIPAPRGTGI 605
KPHTVPCKVTGKCGSVTVR++PAPRG+GI
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGI 197
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 272 bits (667), Expect = 1e-73
Identities = 122/149 (81%), Positives = 138/149 (92%)
Frame = +3
Query: 159 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 338
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQ
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108
Query: 339 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG 518
TRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG
Sbjct: 109 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIG 168
Query: 519 KPHTVPCKVTGKCGSVTVRLIPAPRGTGI 605
KPHTVPCKVTGKCGSVTVR++PAPRG+GI
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGI 197
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 272 bits (667), Expect = 1e-73
Identities = 122/149 (81%), Positives = 138/149 (92%)
Frame = +3
Query: 159 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 338
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQ
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108
Query: 339 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG 518
TRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG
Sbjct: 109 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIG 168
Query: 519 KPHTVPCKVTGKCGSVTVRLIPAPRGTGI 605
KPHTVPCKVTGKCGSVTVR++PAPRG+GI
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGI 197
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 270 bits (662), Expect = 5e-73
Identities = 120/149 (80%), Positives = 138/149 (92%)
Frame = +3
Query: 159 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 338
++++WVPVTKLGRLV G I ++E IYL SLP+KE++IID +GP+L DEV+KIMPVQKQ
Sbjct: 50 EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQ 109
Query: 339 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG 518
TRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG
Sbjct: 110 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIG 169
Query: 519 KPHTVPCKVTGKCGSVTVRLIPAPRGTGI 605
KPHTVPCKVTGKCGSVTVR++PAPRG+GI
Sbjct: 170 KPHTVPCKVTGKCGSVTVRMVPAPRGSGI 198
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 56.8 bits (131), Expect = 1e-08
Identities = 31/101 (30%), Positives = 56/101 (55%)
Frame = +3
Query: 303 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 482
+ V+++ V K + G++ +F+A V +GD G++G+G +KEV A++ + I A+ +++
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIV 208
Query: 483 PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGI 605
V + K T P + G G+ V L PA GTG+
Sbjct: 209 QV-------PMTKYSTFPHRSEGDYGAAKVMLRPASPGTGV 242
>At1g80480.1 68414.m09427 PRLI-interacting factor L, putative
similar to PRLI-interacting factor L [Arabidopsis
thaliana] GI:11139268; contains Pfam profile PF02492:
Cobalamin synthesis protein/P47K
Length = 444
Score = 29.1 bits (62), Expect = 2.4
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -2
Query: 144 HDHGRDHDRVHEDRHGLYLH 85
HDH DHD H D H + H
Sbjct: 320 HDHNHDHDHHHHDGHDHHHH 339
>At3g18530.1 68416.m02357 expressed protein similar to unknown
protein GB:AAF24615 from [Arabidopsis thaliana]
Length = 297
Score = 28.7 bits (61), Expect = 3.2
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = -1
Query: 511 LLPQ*PLRTGRTDSLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPARVCF 332
LL Q L++ + A R VA + H +P + P L P N R+R A CF
Sbjct: 166 LLTQLLLKSSQDKRFVCEAAERALVAMTT-HVSPALLLPKLRPCLKNKSPRIRAKASACF 224
Query: 331 CTGMILRTSSFR 296
+G + R + R
Sbjct: 225 -SGCVPRLEAAR 235
>At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc
transporter ZIP2 [Arabidopsis thaliana]
gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 353
Score = 28.3 bits (60), Expect = 4.2
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +3
Query: 369 AFVAIGDNNGHIGLGVKCSKE 431
AFVA G NN H+G V S+E
Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169
>At3g01450.1 68416.m00069 expressed protein
Length = 326
Score = 28.3 bits (60), Expect = 4.2
Identities = 19/67 (28%), Positives = 29/67 (43%)
Frame = -1
Query: 532 TVCGFPILLPQ*PLRTGRTDSLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVR 353
T+ +LL Q L++ + A + VA + H +P + P L P N R+R
Sbjct: 159 TIDQLDLLLTQLLLKSSQDKRFVCEAAEKALVAMTA-HVSPALLLPKLQPFLKNRNPRIR 217
Query: 352 CPARVCF 332
A CF
Sbjct: 218 AKASTCF 224
>At2g04050.1 68415.m00386 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile: PF01554
uncharacterized membrane protein family
Length = 476
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +3
Query: 525 HTVPCKVTGKCGSVTVRL 578
H VPCK T K G VTV L
Sbjct: 11 HLVPCKDTWKSGQVTVEL 28
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 27.5 bits (58), Expect = 7.3
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 132 RDHDRVHEDRHGLYLHRVIRIRRENRTVHRLEQRPP 25
RDHDR +DR G R R R ++R+ R R P
Sbjct: 130 RDHDRRRDDRGGRRSRR-SRSRSKDRSERRTRSRSP 164
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 27.5 bits (58), Expect = 7.3
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 132 RDHDRVHEDRHGLYLHRVIRIRRENRTVHRLEQRPP 25
RDHDR +DR G R R R ++R+ R R P
Sbjct: 130 RDHDRRRDDRGGRRSRR-SRSRSKDRSERRTRSRSP 164
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 27.5 bits (58), Expect = 7.3
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 132 RDHDRVHEDRHGLYLHRVIRIRRENRTVHRLEQRPP 25
RDHDR +DR G R R R ++R+ R R P
Sbjct: 130 RDHDRRRDDRGGRRSRR-SRSRSKDRSERRTRSRSP 164
>At4g03740.1 68417.m00513 hypothetical protein
Length = 345
Score = 27.5 bits (58), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +2
Query: 539 QGHRQVWFRNSPADSCPSWYWYC 607
+ ++++WFR SCP W C
Sbjct: 60 RNNQEIWFRTFALGSCPHTLWPC 82
>At3g61940.1 68416.m06956 zinc transporter, putative similar to zinc
transporter ZAT [Arabidopsis thaliana]
gi|4206640|gb|AAD11757; similar to zinc transporter
ZnT-2 [Rattus norvegicus] gi|1256378|gb|AAB02775; member
of the cation diffusion facilitator (CDF) family, or
cation efflux (CE) family, PMID:11500563
Length = 334
Score = 27.5 bits (58), Expect = 7.3
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -2
Query: 144 HDHGRDHDRVHEDRHG-LYLHRVIRIRRENRTVHRL 40
HDHG HD H HG Y R ++ +++ + +
Sbjct: 158 HDHGHGHDHGHSHDHGHSYGERAEQLLEKSKEIRNI 193
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,444,542
Number of Sequences: 28952
Number of extensions: 282677
Number of successful extensions: 774
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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