Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0657
         (509 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.06c |caf1|pop2|CCR4-Not complex subunit Caf1|Schizosaccha...    56   4e-09
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su...    27   1.6  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    26   2.9  
SPAC23A1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   5.0  
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22...    25   6.6  
SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces pom...    25   6.6  
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo...    25   6.6  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   6.6  
SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase |Schizosa...    25   8.7  

>SPCC18.06c |caf1|pop2|CCR4-Not complex subunit
           Caf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 55.6 bits (128), Expect = 4e-09
 Identities = 25/54 (46%), Positives = 36/54 (66%)
 Frame = -2

Query: 508 LLKLLTDQNLPHEENDFFERLRLYFPTVYDVKYLMKLCKNLKGGLQEVADQLEL 347
           LLK +T   LP E  +F++ L +YFP  YD+KY+MK   N   GLQ++AD L++
Sbjct: 175 LLKAMTQIPLPAEYEEFYKILCIYFPKNYDIKYIMKSVLNNSKGLQDIADDLQI 228


>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -2

Query: 433 PTVYDVKYLMKLCKNLKGGLQEVADQLELRYFLMETL 323
           PT+     L+      KG L EV  +LE+ YFL+  L
Sbjct: 325 PTLCRADRLVGQVLGSKGNLPEVYTELEINYFLLRRL 361


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -1

Query: 380 WLTRSCRSVGIEIFFDGNIESTSGHLYGLGAP--FTTNANNFQDN 252
           + ++   S  IEI   GN E+T    +GL +   F TN N++ D+
Sbjct: 319 YFSKGYNSYQIEIQMFGNGEATENSAFGLSSLQFFETNQNSYFDD 363


>SPAC23A1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 11/57 (19%), Positives = 26/57 (45%)
 Frame = -2

Query: 247 IVETHLDLNCLAKEFNSVVTSVSYQGIEINNNLYLINFEEISLV*TVINVSVVLSSW 77
           +++   D +C+ +        + Y   ++    YL  ++E  +  TV+ + V L+ W
Sbjct: 6   VIKAKKDYDCVFEPEPMSWLRLQYYRYQVTAGTYLFTYKEAFVFNTVVFIIVFLTGW 62


>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = -2

Query: 295 LELHSLLTPTTSRITWIVETHLDLNCLAKEFNSVVTSVSYQGIEINNNLYLIN 137
           L+  SLL+  ++RIT         +CL + + S     S+ GIE+  NL +++
Sbjct: 191 LQKLSLLSIQSNRITQFENLACLSHCLRELYVSHNGLTSFSGIEVLENLEILD 243


>SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 289 APSPYRCPLVLSMFPSKNISIPTDLQL 369
           AP P   PLV S FP + I +   + L
Sbjct: 221 APGPIYTPLVSSTFPKEKIELSDQVPL 247


>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 651

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -2

Query: 316 RVDICTDLELHSLLTPTTSRITWIVETHLDLNCLAKEFNSVVTSVSYQ 173
           R+ + +D E +  +  T S   WI       + +A E NSV TSV Y+
Sbjct: 587 RLAVASD-EPNVRIFDTVSNRNWICSIPSHSDSIAAEPNSVPTSVQYK 633


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 501  SCLLIKTYLMKRMTSLNDCVYISPP 427
            SCL       +R  SL DC Y+S P
Sbjct: 2961 SCLFTFAVFWQRCESLFDCEYLSTP 2985


>SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 9/25 (36%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
 Frame = -3

Query: 486 KTYLMKR--MTSLNDCVYISPPCMM 418
           K++++K   + S +DC Y+SP C +
Sbjct: 432 KSWILKNGGILSPSDCTYVSPECSL 456


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,873,412
Number of Sequences: 5004
Number of extensions: 36733
Number of successful extensions: 112
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)