Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0657
         (509 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23743| Best HMM Match : No HMM Matches (HMM E-Value=.)              83   1e-16
SB_55733| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00036)        28   5.1  
SB_52711| Best HMM Match : rve (HMM E-Value=8.3e-05)                   27   9.0  
SB_20810| Best HMM Match : rve (HMM E-Value=0.00014)                   27   9.0  

>SB_23743| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 745

 Score = 83.4 bits (197), Expect = 1e-16
 Identities = 37/55 (67%), Positives = 47/55 (85%)
 Frame = -2

Query: 508 LLKLLTDQNLPHEENDFFERLRLYFPTVYDVKYLMKLCKNLKGGLQEVADQLELR 344
           L+K+LT QNL  EE++FFE L+LYFP +YDVKYLMK CK+LKGGLQEV++ L+ R
Sbjct: 162 LIKVLTAQNLSSEESEFFELLKLYFPKIYDVKYLMKSCKSLKGGLQEVSELLDKR 216


>SB_55733| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00036)
          Length = 1211

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 37/153 (24%), Positives = 70/153 (45%), Gaps = 14/153 (9%)
 Frame = -2

Query: 496 LTDQNLPHEENDFF--ERLRLYFPTVYDVKYLMKLCKN---LKGGLQEVADQL-ELRYFL 335
           L D+ L  EEN  F  E L+L    + + K   K+ KN   LK  L+ V  +L +L+   
Sbjct: 326 LEDKELLAEENKCFGLETLKLRKEKLEEYKLFSKIEKNNVRLKEDLKMVCHELNKLKQEH 385

Query: 334 METLKVRVDICTDL-----ELHSL---LTPTTSRITWIVETHLDLNCLAKEFNSVVTSVS 179
            + + +  D   D+     E+  L   ++  T ++   ++ +L L   A      +  + 
Sbjct: 386 SKCMDLYNDQNCDIMNKNEEIEQLSVQVSKLTDQLEKGIDKYLKLEREASNLREEIAELE 445

Query: 178 YQGIEINNNLYLINFEEISLV*TVINVSVVLSS 80
            + +E+N +   ++FE + L  T+ N S  +S+
Sbjct: 446 QENLELNTSFSNLSFEFVGLQNTLENNSGRMSN 478


>SB_52711| Best HMM Match : rve (HMM E-Value=8.3e-05)
          Length = 1086

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 18/95 (18%), Positives = 40/95 (42%)
 Frame = -2

Query: 433  PTVYDVKYLMKLCKNLKGGLQEVADQLELRYFLMETLKVRVDICTDLELHSLLTPTTSRI 254
            P +  + Y  K  + L GG+ +   ++  R+   ET+    +    +E++        + 
Sbjct: 834  PYLVVIDYYSKYIEALNGGITKALMEIFSRHGYPETITADNNPVNSVEMNEYANQCGFKT 893

Query: 253  TWIVETHLDLNCLAKEFNSVVTSVSYQGIEINNNL 149
             +    +   N LA++   +V S+  +G  +N  L
Sbjct: 894  IYTSPLYSQSNGLAEKAVGIVKSILGKGSNLNEGL 928


>SB_20810| Best HMM Match : rve (HMM E-Value=0.00014)
          Length = 801

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 8/29 (27%), Positives = 20/29 (68%)
 Frame = -2

Query: 328 TLKVRVDICTDLELHSLLTPTTSRITWIV 242
           T++V +++  D    +L+TP++  +TW++
Sbjct: 514 TIRVYLELEADYVKQALMTPSSRHVTWLI 542


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,287,556
Number of Sequences: 59808
Number of extensions: 246371
Number of successful extensions: 594
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)