Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0657
         (509 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21854-1|AAA87454.1|  310|Caenorhabditis elegans cCAF1 protein p...    53   1e-07
AL132860-28|CAB60501.1|  310|Caenorhabditis elegans Hypothetical...    53   1e-07
AC024751-10|AAY55884.1|  654|Caenorhabditis elegans Hypothetical...    29   2.6  
AC024776-7|AAK68469.1|  411|Caenorhabditis elegans Nuclear pore ...    27   7.9  

>U21854-1|AAA87454.1|  310|Caenorhabditis elegans cCAF1 protein
           protein.
          Length = 310

 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 29/59 (49%), Positives = 41/59 (69%), Gaps = 4/59 (6%)
 Frame = -2

Query: 508 LLKLLTDQNLPHEENDFFERLRLYFPTVYDVKYLMKL--CKN--LKGGLQEVADQLELR 344
           LLK +T  +LP EE+ FF   +  FPT +D+K L++   C +  LKGGLQEVADQL+++
Sbjct: 176 LLKSITLGDLPKEESTFFMCHKTLFPTSFDIKILLRTPNCASAKLKGGLQEVADQLDVK 234


>AL132860-28|CAB60501.1|  310|Caenorhabditis elegans Hypothetical
           protein Y56A3A.20 protein.
          Length = 310

 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 29/59 (49%), Positives = 41/59 (69%), Gaps = 4/59 (6%)
 Frame = -2

Query: 508 LLKLLTDQNLPHEENDFFERLRLYFPTVYDVKYLMKL--CKN--LKGGLQEVADQLELR 344
           LLK +T  +LP EE+ FF   +  FPT +D+K L++   C +  LKGGLQEVADQL+++
Sbjct: 176 LLKSITLGDLPKEESTFFMCHKTLFPTSFDIKILLRTPNCASAKLKGGLQEVADQLDVK 234


>AC024751-10|AAY55884.1|  654|Caenorhabditis elegans Hypothetical
           protein Y18H1A.15 protein.
          Length = 654

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 23/88 (26%), Positives = 35/88 (39%)
 Frame = -2

Query: 385 KGGLQEVADQLELRYFLMETLKVRVDICTDLELHSLLTPTTSRITWIVETHLDLNCLAKE 206
           K G+    +QLEL   ++E       +  D      LTP     T    T      L +E
Sbjct: 521 KEGMANCTEQLELMEMILEKANTSATLACDSAKMLQLTPINHTTTESPYTTWTRYLLPRE 580

Query: 205 FNSVVTSVSYQGIEINNNLYLINFEEIS 122
            ++V+   S Q +     +YL+ FE  S
Sbjct: 581 GSAVMKKKSVQDVHSPMQVYLV-FENPS 607


>AC024776-7|AAK68469.1|  411|Caenorhabditis elegans Nuclear pore
           complex protein protein8, isoform a protein.
          Length = 411

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -2

Query: 268 TTSRITWIVETHLDLNCLAKEFN-SVVTSVSYQGIEINNNLYLINFE 131
           +T RI    E  + ++ +  EF+    T +S   + I+NNLY+ N+E
Sbjct: 63  STRRIPIPGELQMQMSNIHSEFSMGFFTQISRVWVVIDNNLYMWNYE 109


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,113,230
Number of Sequences: 27780
Number of extensions: 197055
Number of successful extensions: 559
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)